Cluster: CokerMO_2019_SRR8692215_bin.33_CGC59
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: CokerMO_2019_SRR8692215_bin.33
- CGC Family ID: CGCFAM_00001
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | CokerMO_2019_SRR8692215_bin.33_k141_45780 | CokerMO_2019_SRR8692215_bin.33_k141_45780_26 | 37756 | 40221 | + | 9.A.8.1.6 |
| NULL(UNKNOWN) | CokerMO_2019_SRR8692215_bin.33_k141_45780 | CokerMO_2019_SRR8692215_bin.33_k141_45780_27 | 40218 | 40433 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | CokerMO_2019_SRR8692215_bin.33_k141_45780 | CokerMO_2019_SRR8692215_bin.33_k141_45780_28 | 40814 | 41590 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | CokerMO_2019_SRR8692215_bin.33_k141_45780 | CokerMO_2019_SRR8692215_bin.33_k141_45780_29 | 42313 | 44760 | - | GH20 |
| TF | CokerMO_2019_SRR8692215_bin.33_k141_45780 | CokerMO_2019_SRR8692215_bin.33_k141_45780_30 | 44831 | 45523 | - | 0038753 |
| pfam | CokerMO_2019_SRR8692215_bin.33_k141_45780 | CokerMO_2019_SRR8692215_bin.33_k141_45780_31 | 45665 | 47875 | + | DUF5686 |
| TC | CokerMO_2019_SRR8692215_bin.33_k141_45780 | CokerMO_2019_SRR8692215_bin.33_k141_45780_32 | 48198 | 51419 | + | 1.B.14.6.1 |
| pfam | CokerMO_2019_SRR8692215_bin.33_k141_45780 | CokerMO_2019_SRR8692215_bin.33_k141_45780_33 | 51441 | 52997 | + | SusD_RagB | SusD-like_3 |
| NULL(UNKNOWN) | CokerMO_2019_SRR8692215_bin.33_k141_45780 | CokerMO_2019_SRR8692215_bin.33_k141_45780_34 | 53027 | 54493 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | CokerMO_2019_SRR8692215_bin.33_k141_45780 | CokerMO_2019_SRR8692215_bin.33_k141_45780_35 | 54631 | 55989 | + | GH16_3 |
| CAZyme | CokerMO_2019_SRR8692215_bin.33_k141_45780 | CokerMO_2019_SRR8692215_bin.33_k141_45780_36 | 56001 | 58256 | + | GH3 |
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_45780_26
Type: TC
Location: 37756 - 40221 (+)
Type: TC
Location: 37756 - 40221 (+)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_45780_27
Type:
Location: 40218 - 40433 (+)
Type:
Location: 40218 - 40433 (+)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_45780_28
Type:
Location: 40814 - 41590 (-)
Type:
Location: 40814 - 41590 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_45780_29
Type: CAZyme
Location: 42313 - 44760 (-)
Type: CAZyme
Location: 42313 - 44760 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_45780_30
Type: TF
Location: 44831 - 45523 (-)
Type: TF
Location: 44831 - 45523 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_45780_31
Type: pfam
Location: 45665 - 47875 (+)
Type: pfam
Location: 45665 - 47875 (+)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_45780_32
Type: TC
Location: 48198 - 51419 (+)
Type: TC
Location: 48198 - 51419 (+)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_45780_33
Type: pfam
Location: 51441 - 52997 (+)
Type: pfam
Location: 51441 - 52997 (+)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_45780_34
Type:
Location: 53027 - 54493 (+)
Type:
Location: 53027 - 54493 (+)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_45780_35
Type: CAZyme
Location: 54631 - 55989 (+)
Type: CAZyme
Location: 54631 - 55989 (+)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_45780_36
Type: CAZyme
Location: 56001 - 58256 (+)
Type: CAZyme
Location: 56001 - 58256 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp900766195
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| CokerMO_2019_SRR8692215_bin.33_k141_45780_32 | vegan > omnivore | 1.04018 | 0.00863 |
| CokerMO_2019_SRR8692215_bin.33_k141_45780_32 | vegetarian > omnivore | 1.99397 | 0.00444 |
| CokerMO_2019_SRR8692215_bin.33_k141_45780_33 | vegan > omnivore | 1.52432 | 0.00863 |