Cluster: CokerMO_2019_SRR8692215_bin.33_CGC31
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 2
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: CokerMO_2019_SRR8692215_bin.33
- CGC Family ID: CGCFAM_00001
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | CokerMO_2019_SRR8692215_bin.33_k141_22155 | CokerMO_2019_SRR8692215_bin.33_k141_22155_136 | 158166 | 161339 | + | 1.B.14.6.1 |
| pfam | CokerMO_2019_SRR8692215_bin.33_k141_22155 | CokerMO_2019_SRR8692215_bin.33_k141_22155_137 | 161361 | 162911 | + | SusD_RagB | SusD-like_3 |
| TC | CokerMO_2019_SRR8692215_bin.33_k141_22155 | CokerMO_2019_SRR8692215_bin.33_k141_22155_138 | 163039 | 163296 | + | 2.A.124.1.2 |
| TC | CokerMO_2019_SRR8692215_bin.33_k141_22155 | CokerMO_2019_SRR8692215_bin.33_k141_22155_139 | 163293 | 163895 | + | 2.A.124.1.2 |
| CAZyme | CokerMO_2019_SRR8692215_bin.33_k141_22155 | CokerMO_2019_SRR8692215_bin.33_k141_22155_140 | 163915 | 167049 | + | GH2 |
| CAZyme | CokerMO_2019_SRR8692215_bin.33_k141_22155 | CokerMO_2019_SRR8692215_bin.33_k141_22155_141 | 167185 | 169113 | + | GH63 |
| TC | CokerMO_2019_SRR8692215_bin.33_k141_22155 | CokerMO_2019_SRR8692215_bin.33_k141_22155_142 | 169573 | 170229 | + | 1.C.113.1.10 |
| STP | CokerMO_2019_SRR8692215_bin.33_k141_22155 | CokerMO_2019_SRR8692215_bin.33_k141_22155_143 | 170238 | 171200 | - | TPR_1 |
| NULL(UNKNOWN) | CokerMO_2019_SRR8692215_bin.33_k141_22155 | CokerMO_2019_SRR8692215_bin.33_k141_22155_144 | 171238 | 171390 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | CokerMO_2019_SRR8692215_bin.33_k141_22155 | CokerMO_2019_SRR8692215_bin.33_k141_22155_145 | 171606 | 173495 | - | 2.A.16.2.2 |
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_22155_136
Type: TC
Location: 158166 - 161339 (+)
Type: TC
Location: 158166 - 161339 (+)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_22155_137
Type: pfam
Location: 161361 - 162911 (+)
Type: pfam
Location: 161361 - 162911 (+)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_22155_138
Type: TC
Location: 163039 - 163296 (+)
Type: TC
Location: 163039 - 163296 (+)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_22155_139
Type: TC
Location: 163293 - 163895 (+)
Type: TC
Location: 163293 - 163895 (+)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_22155_140
Type: CAZyme
Location: 163915 - 167049 (+)
Type: CAZyme
Location: 163915 - 167049 (+)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_22155_141
Type: CAZyme
Location: 167185 - 169113 (+)
Type: CAZyme
Location: 167185 - 169113 (+)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_22155_142
Type: TC
Location: 169573 - 170229 (+)
Type: TC
Location: 169573 - 170229 (+)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_22155_143
Type: STP
Location: 170238 - 171200 (-)
Type: STP
Location: 170238 - 171200 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_22155_144
Type:
Location: 171238 - 171390 (-)
Type:
Location: 171238 - 171390 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_22155_145
Type: TC
Location: 171606 - 173495 (-)
Type: TC
Location: 171606 - 173495 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp900766195
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.