Cluster: CokerMO_2019_SRR8692215_bin.33_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: CokerMO_2019_SRR8692215_bin.33
- CGC Family ID: CGCFAM_00001
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | CokerMO_2019_SRR8692215_bin.33_k141_2509 | CokerMO_2019_SRR8692215_bin.33_k141_2509_41 | 42125 | 44128 | - | GH97 |
| NULL(UNKNOWN) | CokerMO_2019_SRR8692215_bin.33_k141_2509 | CokerMO_2019_SRR8692215_bin.33_k141_2509_42 | 44155 | 46176 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | CokerMO_2019_SRR8692215_bin.33_k141_2509 | CokerMO_2019_SRR8692215_bin.33_k141_2509_43 | 46385 | 48028 | - | SusD_RagB | SusD-like_3 |
| TC | CokerMO_2019_SRR8692215_bin.33_k141_2509 | CokerMO_2019_SRR8692215_bin.33_k141_2509_44 | 48051 | 51146 | - | 1.B.14.6.1 |
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_2509_41
Type: CAZyme
Location: 42125 - 44128 (-)
Type: CAZyme
Location: 42125 - 44128 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_2509_42
Type:
Location: 44155 - 46176 (-)
Type:
Location: 44155 - 46176 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_2509_43
Type: pfam
Location: 46385 - 48028 (-)
Type: pfam
Location: 46385 - 48028 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_2509_44
Type: TC
Location: 48051 - 51146 (-)
Type: TC
Location: 48051 - 51146 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp900766195
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.