Cluster: CokerMO_2019_SRR8692215_bin.33_CGC22
🧬 Cluster Details
- Gene Count: 19
- CAZyme Count: 13
- Substrate: arabinogalactan/pectin
- Genome ID: CokerMO_2019_SRR8692215_bin.33
- CGC Family ID: CGCFAM_00212
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | CokerMO_2019_SRR8692215_bin.33_k141_19056 | CokerMO_2019_SRR8692215_bin.33_k141_19056_7 | 11194 | 13413 | - | GH78 |
| CAZyme | CokerMO_2019_SRR8692215_bin.33_k141_19056 | CokerMO_2019_SRR8692215_bin.33_k141_19056_8 | 13503 | 15506 | - | GH141 |
| CAZyme | CokerMO_2019_SRR8692215_bin.33_k141_19056 | CokerMO_2019_SRR8692215_bin.33_k141_19056_9 | 15551 | 17644 | - | GH127 |
| CAZyme | CokerMO_2019_SRR8692215_bin.33_k141_19056 | CokerMO_2019_SRR8692215_bin.33_k141_19056_10 | 17736 | 21617 | - | CBM67 | GH33 | GH78 |
| CAZyme | CokerMO_2019_SRR8692215_bin.33_k141_19056 | CokerMO_2019_SRR8692215_bin.33_k141_19056_11 | 21678 | 23177 | - | GH140 |
| CAZyme | CokerMO_2019_SRR8692215_bin.33_k141_19056 | CokerMO_2019_SRR8692215_bin.33_k141_19056_12 | 23220 | 25667 | - | GH95 |
| CAZyme | CokerMO_2019_SRR8692215_bin.33_k141_19056 | CokerMO_2019_SRR8692215_bin.33_k141_19056_13 | 25681 | 27021 | - | CE19 |
| CAZyme | CokerMO_2019_SRR8692215_bin.33_k141_19056 | CokerMO_2019_SRR8692215_bin.33_k141_19056_14 | 27113 | 28447 | - | GH28 |
| CAZyme | CokerMO_2019_SRR8692215_bin.33_k141_19056 | CokerMO_2019_SRR8692215_bin.33_k141_19056_15 | 28577 | 31549 | - | CBM67 | GH78 |
| CAZyme | CokerMO_2019_SRR8692215_bin.33_k141_19056 | CokerMO_2019_SRR8692215_bin.33_k141_19056_16 | 31560 | 34874 | - | GH142 | GH143 |
| CAZyme | CokerMO_2019_SRR8692215_bin.33_k141_19056 | CokerMO_2019_SRR8692215_bin.33_k141_19056_17 | 34874 | 35806 | - | GH43_18 |
| CAZyme | CokerMO_2019_SRR8692215_bin.33_k141_19056 | CokerMO_2019_SRR8692215_bin.33_k141_19056_18 | 35941 | 37656 | - | PL1_2 |
| pfam | CokerMO_2019_SRR8692215_bin.33_k141_19056 | CokerMO_2019_SRR8692215_bin.33_k141_19056_19 | 37631 | 39601 | - | SusD_RagB | SusD-like_3 |
| TC | CokerMO_2019_SRR8692215_bin.33_k141_19056 | CokerMO_2019_SRR8692215_bin.33_k141_19056_20 | 39624 | 42821 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | CokerMO_2019_SRR8692215_bin.33_k141_19056 | CokerMO_2019_SRR8692215_bin.33_k141_19056_21 | 42975 | 43148 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | CokerMO_2019_SRR8692215_bin.33_k141_19056 | CokerMO_2019_SRR8692215_bin.33_k141_19056_22 | 43067 | 43732 | - | DUF3826 |
| CAZyme | CokerMO_2019_SRR8692215_bin.33_k141_19056 | CokerMO_2019_SRR8692215_bin.33_k141_19056_23 | 43738 | 45456 | - | PL1_2 |
| pfam | CokerMO_2019_SRR8692215_bin.33_k141_19056 | CokerMO_2019_SRR8692215_bin.33_k141_19056_24 | 45649 | 47670 | - | SusD_RagB | SusD-like_3 |
| TC | CokerMO_2019_SRR8692215_bin.33_k141_19056 | CokerMO_2019_SRR8692215_bin.33_k141_19056_25 | 47696 | 51151 | - | 1.B.14.6.1 |
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_19056_7
Type: CAZyme
Location: 11194 - 13413 (-)
Type: CAZyme
Location: 11194 - 13413 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_19056_8
Type: CAZyme
Location: 13503 - 15506 (-)
Type: CAZyme
Location: 13503 - 15506 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_19056_9
Type: CAZyme
Location: 15551 - 17644 (-)
Type: CAZyme
Location: 15551 - 17644 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_19056_10
Type: CAZyme
Location: 17736 - 21617 (-)
Type: CAZyme
Location: 17736 - 21617 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_19056_11
Type: CAZyme
Location: 21678 - 23177 (-)
Type: CAZyme
Location: 21678 - 23177 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_19056_12
Type: CAZyme
Location: 23220 - 25667 (-)
Type: CAZyme
Location: 23220 - 25667 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_19056_13
Type: CAZyme
Location: 25681 - 27021 (-)
Type: CAZyme
Location: 25681 - 27021 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_19056_14
Type: CAZyme
Location: 27113 - 28447 (-)
Type: CAZyme
Location: 27113 - 28447 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_19056_15
Type: CAZyme
Location: 28577 - 31549 (-)
Type: CAZyme
Location: 28577 - 31549 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_19056_16
Type: CAZyme
Location: 31560 - 34874 (-)
Type: CAZyme
Location: 31560 - 34874 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_19056_17
Type: CAZyme
Location: 34874 - 35806 (-)
Type: CAZyme
Location: 34874 - 35806 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_19056_18
Type: CAZyme
Location: 35941 - 37656 (-)
Type: CAZyme
Location: 35941 - 37656 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_19056_19
Type: pfam
Location: 37631 - 39601 (-)
Type: pfam
Location: 37631 - 39601 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_19056_20
Type: TC
Location: 39624 - 42821 (-)
Type: TC
Location: 39624 - 42821 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_19056_21
Type:
Location: 42975 - 43148 (+)
Type:
Location: 42975 - 43148 (+)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_19056_22
Type: pfam
Location: 43067 - 43732 (-)
Type: pfam
Location: 43067 - 43732 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_19056_23
Type: CAZyme
Location: 43738 - 45456 (-)
Type: CAZyme
Location: 43738 - 45456 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_19056_24
Type: pfam
Location: 45649 - 47670 (-)
Type: pfam
Location: 45649 - 47670 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.33_k141_19056_25
Type: TC
Location: 47696 - 51151 (-)
Type: TC
Location: 47696 - 51151 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp900766195
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.