Cluster: CokerMO_2019_SRR8692215_bin.31_CGC58
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 3
- Substrate:
- Genome ID: CokerMO_2019_SRR8692215_bin.31
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | CokerMO_2019_SRR8692215_bin.31_k141_53191 | CokerMO_2019_SRR8692215_bin.31_k141_53191_123 | 151811 | 153550 | - | GH2 |
| pfam | CokerMO_2019_SRR8692215_bin.31_k141_53191 | CokerMO_2019_SRR8692215_bin.31_k141_53191_124 | 153682 | 154470 | - | ABC2_membrane_6 |
| NULL(UNKNOWN) | CokerMO_2019_SRR8692215_bin.31_k141_53191 | CokerMO_2019_SRR8692215_bin.31_k141_53191_125 | 154478 | 155281 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | CokerMO_2019_SRR8692215_bin.31_k141_53191 | CokerMO_2019_SRR8692215_bin.31_k141_53191_126 | 155293 | 156093 | - | 3.A.1.141.2 |
| pfam | CokerMO_2019_SRR8692215_bin.31_k141_53191 | CokerMO_2019_SRR8692215_bin.31_k141_53191_127 | 156400 | 157197 | - | AP_endonuc_2 |
| CAZyme | CokerMO_2019_SRR8692215_bin.31_k141_53191 | CokerMO_2019_SRR8692215_bin.31_k141_53191_128 | 157197 | 159254 | - | GH42 |
| CAZyme | CokerMO_2019_SRR8692215_bin.31_k141_53191 | CokerMO_2019_SRR8692215_bin.31_k141_53191_129 | 159244 | 161196 | - | PL27 |
| TF | CokerMO_2019_SRR8692215_bin.31_k141_53191 | CokerMO_2019_SRR8692215_bin.31_k141_53191_130 | 161408 | 162217 | - | HTH_AraC | HTH_AraC |
| TC | CokerMO_2019_SRR8692215_bin.31_k141_53191 | CokerMO_2019_SRR8692215_bin.31_k141_53191_131 | 162282 | 162839 | - | 3.A.1.26.9 |
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_53191_123
Type: CAZyme
Location: 151811 - 153550 (-)
Type: CAZyme
Location: 151811 - 153550 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_53191_124
Type: pfam
Location: 153682 - 154470 (-)
Type: pfam
Location: 153682 - 154470 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_53191_125
Type:
Location: 154478 - 155281 (-)
Type:
Location: 154478 - 155281 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_53191_126
Type: TC
Location: 155293 - 156093 (-)
Type: TC
Location: 155293 - 156093 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_53191_127
Type: pfam
Location: 156400 - 157197 (-)
Type: pfam
Location: 156400 - 157197 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_53191_128
Type: CAZyme
Location: 157197 - 159254 (-)
Type: CAZyme
Location: 157197 - 159254 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_53191_129
Type: CAZyme
Location: 159244 - 161196 (-)
Type: CAZyme
Location: 159244 - 161196 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_53191_130
Type: TF
Location: 161408 - 162217 (-)
Type: TF
Location: 161408 - 162217 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_53191_131
Type: TC
Location: 162282 - 162839 (-)
Type: TC
Location: 162282 - 162839 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Fimimorpha
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.