Cluster: CokerMO_2019_SRR8692215_bin.31_CGC49
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: CokerMO_2019_SRR8692215_bin.31
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | CokerMO_2019_SRR8692215_bin.31_k141_44547 | CokerMO_2019_SRR8692215_bin.31_k141_44547_37 | 40868 | 42133 | + | 2.A.86.1.8 |
| pfam | CokerMO_2019_SRR8692215_bin.31_k141_44547 | CokerMO_2019_SRR8692215_bin.31_k141_44547_38 | 42120 | 42878 | + | DNA_alkylation |
| STP | CokerMO_2019_SRR8692215_bin.31_k141_44547 | CokerMO_2019_SRR8692215_bin.31_k141_44547_39 | 42883 | 43341 | + | GAF |
| CAZyme | CokerMO_2019_SRR8692215_bin.31_k141_44547 | CokerMO_2019_SRR8692215_bin.31_k141_44547_40 | 43497 | 45194 | - | GH123 |
| pfam | CokerMO_2019_SRR8692215_bin.31_k141_44547 | CokerMO_2019_SRR8692215_bin.31_k141_44547_41 | 45465 | 46403 | + | DNA_methylase |
| pfam | CokerMO_2019_SRR8692215_bin.31_k141_44547 | CokerMO_2019_SRR8692215_bin.31_k141_44547_42 | 46391 | 47245 | + | NgoMIV_restric |
| TC | CokerMO_2019_SRR8692215_bin.31_k141_44547 | CokerMO_2019_SRR8692215_bin.31_k141_44547_43 | 47432 | 50038 | + | 3.A.9.1.2 |
| TC | CokerMO_2019_SRR8692215_bin.31_k141_44547 | CokerMO_2019_SRR8692215_bin.31_k141_44547_44 | 50254 | 51525 | + | 2.A.37.2.2 |
| pfam | CokerMO_2019_SRR8692215_bin.31_k141_44547 | CokerMO_2019_SRR8692215_bin.31_k141_44547_45 | 51902 | 53371 | + | Mur_ligase | Mur_ligase_C | Mur_ligase_M |
| TC | CokerMO_2019_SRR8692215_bin.31_k141_44547 | CokerMO_2019_SRR8692215_bin.31_k141_44547_46 | 53386 | 54171 | + | 2.A.102.4.4 |
| TC | CokerMO_2019_SRR8692215_bin.31_k141_44547 | CokerMO_2019_SRR8692215_bin.31_k141_44547_47 | 54397 | 56340 | + | 3.A.16.1.2 |
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_44547_37
Type: TC
Location: 40868 - 42133 (+)
Type: TC
Location: 40868 - 42133 (+)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_44547_38
Type: pfam
Location: 42120 - 42878 (+)
Type: pfam
Location: 42120 - 42878 (+)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_44547_39
Type: STP
Location: 42883 - 43341 (+)
Type: STP
Location: 42883 - 43341 (+)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_44547_40
Type: CAZyme
Location: 43497 - 45194 (-)
Type: CAZyme
Location: 43497 - 45194 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_44547_41
Type: pfam
Location: 45465 - 46403 (+)
Type: pfam
Location: 45465 - 46403 (+)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_44547_42
Type: pfam
Location: 46391 - 47245 (+)
Type: pfam
Location: 46391 - 47245 (+)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_44547_43
Type: TC
Location: 47432 - 50038 (+)
Type: TC
Location: 47432 - 50038 (+)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_44547_44
Type: TC
Location: 50254 - 51525 (+)
Type: TC
Location: 50254 - 51525 (+)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_44547_45
Type: pfam
Location: 51902 - 53371 (+)
Type: pfam
Location: 51902 - 53371 (+)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_44547_46
Type: TC
Location: 53386 - 54171 (+)
Type: TC
Location: 53386 - 54171 (+)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_44547_47
Type: TC
Location: 54397 - 56340 (+)
Type: TC
Location: 54397 - 56340 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Fimimorpha
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.