Cluster: CokerMO_2019_SRR8692215_bin.31_CGC33
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: CokerMO_2019_SRR8692215_bin.31
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | CokerMO_2019_SRR8692215_bin.31_k141_27988 | CokerMO_2019_SRR8692215_bin.31_k141_27988_28 | 31897 | 32613 | - | 3.A.1.17.3 |
| TC | CokerMO_2019_SRR8692215_bin.31_k141_27988 | CokerMO_2019_SRR8692215_bin.31_k141_27988_29 | 32603 | 33367 | - | 3.A.1.16.3 |
| TF | CokerMO_2019_SRR8692215_bin.31_k141_27988 | CokerMO_2019_SRR8692215_bin.31_k141_27988_30 | 33449 | 34309 | - | HTH_6 |
| pfam | CokerMO_2019_SRR8692215_bin.31_k141_27988 | CokerMO_2019_SRR8692215_bin.31_k141_27988_31 | 34688 | 35416 | + | Glucosamine_iso |
| TC | CokerMO_2019_SRR8692215_bin.31_k141_27988 | CokerMO_2019_SRR8692215_bin.31_k141_27988_32 | 35528 | 36367 | - | 3.A.1.3.25 |
| TC | CokerMO_2019_SRR8692215_bin.31_k141_27988 | CokerMO_2019_SRR8692215_bin.31_k141_27988_33 | 36351 | 37061 | - | 3.A.1.3.20 |
| TC | CokerMO_2019_SRR8692215_bin.31_k141_27988 | CokerMO_2019_SRR8692215_bin.31_k141_27988_34 | 37081 | 37932 | - | 3.A.1.3.2 |
| TC | CokerMO_2019_SRR8692215_bin.31_k141_27988 | CokerMO_2019_SRR8692215_bin.31_k141_27988_35 | 38100 | 39461 | - | 2.A.66.1.33 |
| CAZyme | CokerMO_2019_SRR8692215_bin.31_k141_27988 | CokerMO_2019_SRR8692215_bin.31_k141_27988_36 | 39774 | 41828 | + | GH42 |
| TC | CokerMO_2019_SRR8692215_bin.31_k141_27988 | CokerMO_2019_SRR8692215_bin.31_k141_27988_37 | 41829 | 42812 | + | 3.A.1.15.11 |
| TC | CokerMO_2019_SRR8692215_bin.31_k141_27988 | CokerMO_2019_SRR8692215_bin.31_k141_27988_38 | 42812 | 43522 | + | 3.A.1.15.1 |
| TC | CokerMO_2019_SRR8692215_bin.31_k141_27988 | CokerMO_2019_SRR8692215_bin.31_k141_27988_39 | 43539 | 44369 | + | 3.A.1.15.5 |
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_27988_28
Type: TC
Location: 31897 - 32613 (-)
Type: TC
Location: 31897 - 32613 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_27988_29
Type: TC
Location: 32603 - 33367 (-)
Type: TC
Location: 32603 - 33367 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_27988_30
Type: TF
Location: 33449 - 34309 (-)
Type: TF
Location: 33449 - 34309 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_27988_31
Type: pfam
Location: 34688 - 35416 (+)
Type: pfam
Location: 34688 - 35416 (+)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_27988_32
Type: TC
Location: 35528 - 36367 (-)
Type: TC
Location: 35528 - 36367 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_27988_33
Type: TC
Location: 36351 - 37061 (-)
Type: TC
Location: 36351 - 37061 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_27988_34
Type: TC
Location: 37081 - 37932 (-)
Type: TC
Location: 37081 - 37932 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_27988_35
Type: TC
Location: 38100 - 39461 (-)
Type: TC
Location: 38100 - 39461 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_27988_36
Type: CAZyme
Location: 39774 - 41828 (+)
Type: CAZyme
Location: 39774 - 41828 (+)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_27988_37
Type: TC
Location: 41829 - 42812 (+)
Type: TC
Location: 41829 - 42812 (+)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_27988_38
Type: TC
Location: 42812 - 43522 (+)
Type: TC
Location: 42812 - 43522 (+)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_27988_39
Type: TC
Location: 43539 - 44369 (+)
Type: TC
Location: 43539 - 44369 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Fimimorpha
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.