Cluster: CokerMO_2019_SRR8692215_bin.31_CGC23
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate:
- Genome ID: CokerMO_2019_SRR8692215_bin.31
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | CokerMO_2019_SRR8692215_bin.31_k141_17576 | CokerMO_2019_SRR8692215_bin.31_k141_17576_1 | 197 | 1954 | - | GH35 |
| NULL(UNKNOWN) | CokerMO_2019_SRR8692215_bin.31_k141_17576 | CokerMO_2019_SRR8692215_bin.31_k141_17576_2 | 2047 | 2805 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | CokerMO_2019_SRR8692215_bin.31_k141_17576 | CokerMO_2019_SRR8692215_bin.31_k141_17576_3 | 3067 | 3645 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | CokerMO_2019_SRR8692215_bin.31_k141_17576 | CokerMO_2019_SRR8692215_bin.31_k141_17576_4 | 3819 | 5798 | + | GT4 |
| pfam | CokerMO_2019_SRR8692215_bin.31_k141_17576 | CokerMO_2019_SRR8692215_bin.31_k141_17576_5 | 5889 | 7277 | + | VWA | VWA_2 |
| TC | CokerMO_2019_SRR8692215_bin.31_k141_17576 | CokerMO_2019_SRR8692215_bin.31_k141_17576_6 | 7424 | 8050 | + | 9.B.156.3.1 |
| TF | CokerMO_2019_SRR8692215_bin.31_k141_17576 | CokerMO_2019_SRR8692215_bin.31_k141_17576_7 | 8032 | 8850 | - | HTH_AraC | HTH_AraC |
| CAZyme | CokerMO_2019_SRR8692215_bin.31_k141_17576 | CokerMO_2019_SRR8692215_bin.31_k141_17576_8 | 9068 | 10912 | + | GH120 |
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_17576_1
Type: CAZyme
Location: 197 - 1954 (-)
Type: CAZyme
Location: 197 - 1954 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_17576_2
Type:
Location: 2047 - 2805 (-)
Type:
Location: 2047 - 2805 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_17576_3
Type:
Location: 3067 - 3645 (-)
Type:
Location: 3067 - 3645 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_17576_4
Type: CAZyme
Location: 3819 - 5798 (+)
Type: CAZyme
Location: 3819 - 5798 (+)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_17576_5
Type: pfam
Location: 5889 - 7277 (+)
Type: pfam
Location: 5889 - 7277 (+)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_17576_6
Type: TC
Location: 7424 - 8050 (+)
Type: TC
Location: 7424 - 8050 (+)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_17576_7
Type: TF
Location: 8032 - 8850 (-)
Type: TF
Location: 8032 - 8850 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_17576_8
Type: CAZyme
Location: 9068 - 10912 (+)
Type: CAZyme
Location: 9068 - 10912 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Fimimorpha
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.