Cluster: CokerMO_2019_SRR8692215_bin.31_CGC16
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate:
- Genome ID: CokerMO_2019_SRR8692215_bin.31
- CGC Family ID: CGCFAM_05619
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | CokerMO_2019_SRR8692215_bin.31_k141_11688 | CokerMO_2019_SRR8692215_bin.31_k141_11688_352 | 390774 | 392354 | - | 3.A.1.1.9 |
| TC | CokerMO_2019_SRR8692215_bin.31_k141_11688 | CokerMO_2019_SRR8692215_bin.31_k141_11688_353 | 392464 | 393336 | - | 3.A.1.1.10 |
| TC | CokerMO_2019_SRR8692215_bin.31_k141_11688 | CokerMO_2019_SRR8692215_bin.31_k141_11688_354 | 393336 | 394271 | - | 3.A.1.1.10 |
| pfam | CokerMO_2019_SRR8692215_bin.31_k141_11688 | CokerMO_2019_SRR8692215_bin.31_k141_11688_355 | 394319 | 394900 | - | Hydrolase | Hydrolase_like | HAD_2 |
| CAZyme | CokerMO_2019_SRR8692215_bin.31_k141_11688 | CokerMO_2019_SRR8692215_bin.31_k141_11688_356 | 394996 | 398202 | - | GH38 |
| CAZyme | CokerMO_2019_SRR8692215_bin.31_k141_11688 | CokerMO_2019_SRR8692215_bin.31_k141_11688_357 | 398492 | 399766 | - | GH28 |
| CAZyme | CokerMO_2019_SRR8692215_bin.31_k141_11688 | CokerMO_2019_SRR8692215_bin.31_k141_11688_358 | 399786 | 400898 | - | GH105 |
| NULL(UNKNOWN) | CokerMO_2019_SRR8692215_bin.31_k141_11688 | CokerMO_2019_SRR8692215_bin.31_k141_11688_359 | 400885 | 403035 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | CokerMO_2019_SRR8692215_bin.31_k141_11688 | CokerMO_2019_SRR8692215_bin.31_k141_11688_360 | 403065 | 403946 | - | 3.A.1.1.10 |
| TC | CokerMO_2019_SRR8692215_bin.31_k141_11688 | CokerMO_2019_SRR8692215_bin.31_k141_11688_361 | 403962 | 404912 | - | 3.A.1.1.10 |
| STP | CokerMO_2019_SRR8692215_bin.31_k141_11688 | CokerMO_2019_SRR8692215_bin.31_k141_11688_362 | 404991 | 406634 | - | SBP_bac_1 |
| TF | CokerMO_2019_SRR8692215_bin.31_k141_11688 | CokerMO_2019_SRR8692215_bin.31_k141_11688_363 | 406859 | 409159 | - | HTH_AraC |
| CAZyme | CokerMO_2019_SRR8692215_bin.31_k141_11688 | CokerMO_2019_SRR8692215_bin.31_k141_11688_364 | 409164 | 410297 | - | GH105 |
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_11688_352
Type: TC
Location: 390774 - 392354 (-)
Type: TC
Location: 390774 - 392354 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_11688_353
Type: TC
Location: 392464 - 393336 (-)
Type: TC
Location: 392464 - 393336 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_11688_354
Type: TC
Location: 393336 - 394271 (-)
Type: TC
Location: 393336 - 394271 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_11688_355
Type: pfam
Location: 394319 - 394900 (-)
Type: pfam
Location: 394319 - 394900 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_11688_356
Type: CAZyme
Location: 394996 - 398202 (-)
Type: CAZyme
Location: 394996 - 398202 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_11688_357
Type: CAZyme
Location: 398492 - 399766 (-)
Type: CAZyme
Location: 398492 - 399766 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_11688_358
Type: CAZyme
Location: 399786 - 400898 (-)
Type: CAZyme
Location: 399786 - 400898 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_11688_359
Type:
Location: 400885 - 403035 (-)
Type:
Location: 400885 - 403035 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_11688_360
Type: TC
Location: 403065 - 403946 (-)
Type: TC
Location: 403065 - 403946 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_11688_361
Type: TC
Location: 403962 - 404912 (-)
Type: TC
Location: 403962 - 404912 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_11688_362
Type: STP
Location: 404991 - 406634 (-)
Type: STP
Location: 404991 - 406634 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_11688_363
Type: TF
Location: 406859 - 409159 (-)
Type: TF
Location: 406859 - 409159 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_11688_364
Type: CAZyme
Location: 409164 - 410297 (-)
Type: CAZyme
Location: 409164 - 410297 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Fimimorpha
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.