dbCAN Logo

Cluster: CokerMO_2019_SRR8692215_bin.31_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme CokerMO_2019_SRR8692215_bin.31_k141_4186 CokerMO_2019_SRR8692215_bin.31_k141_4186_1 1 1968 - GH28
pfam CokerMO_2019_SRR8692215_bin.31_k141_4186 CokerMO_2019_SRR8692215_bin.31_k141_4186_2 2140 3417 - Pyr_redox | FAD_binding_2 | GIDA | GIDA | FAD_oxidored | NAD_binding_8
CAZyme CokerMO_2019_SRR8692215_bin.31_k141_4186 CokerMO_2019_SRR8692215_bin.31_k141_4186_3 3611 4867 - GH28
CAZyme CokerMO_2019_SRR8692215_bin.31_k141_4186 CokerMO_2019_SRR8692215_bin.31_k141_4186_4 4981 7584 - GH106
pfam CokerMO_2019_SRR8692215_bin.31_k141_4186 CokerMO_2019_SRR8692215_bin.31_k141_4186_5 7618 9117 - Arabinose_Iso_C
TF CokerMO_2019_SRR8692215_bin.31_k141_4186 CokerMO_2019_SRR8692215_bin.31_k141_4186_6 9367 10242 + HTH_AraC | HTH_AraC
CAZyme CokerMO_2019_SRR8692215_bin.31_k141_4186 CokerMO_2019_SRR8692215_bin.31_k141_4186_7 10282 12210 - GH29
TF CokerMO_2019_SRR8692215_bin.31_k141_4186 CokerMO_2019_SRR8692215_bin.31_k141_4186_8 12336 14651 + HTH_AraC | HTH_AraC
CAZyme CokerMO_2019_SRR8692215_bin.31_k141_4186 CokerMO_2019_SRR8692215_bin.31_k141_4186_9 14753 15781 - GH117 | GH117
STP CokerMO_2019_SRR8692215_bin.31_k141_4186 CokerMO_2019_SRR8692215_bin.31_k141_4186_10 15902 17686 - SBP_bac_1
TC CokerMO_2019_SRR8692215_bin.31_k141_4186 CokerMO_2019_SRR8692215_bin.31_k141_4186_11 17826 19574 - 3.A.1.1.9
TF CokerMO_2019_SRR8692215_bin.31_k141_4186 CokerMO_2019_SRR8692215_bin.31_k141_4186_12 19804 20664 + HTH_AraC
sulfatase CokerMO_2019_SRR8692215_bin.31_k141_4186 CokerMO_2019_SRR8692215_bin.31_k141_4186_13 20776 22230 - S1_95
TC CokerMO_2019_SRR8692215_bin.31_k141_4186 CokerMO_2019_SRR8692215_bin.31_k141_4186_14 22413 24017 - 2.A.36.6.4
TC CokerMO_2019_SRR8692215_bin.31_k141_4186 CokerMO_2019_SRR8692215_bin.31_k141_4186_15 24017 25369 - 2.A.66.1.32
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_4186_1
Type: CAZyme
Location: 1 - 1968 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_4186_2
Type: pfam
Location: 2140 - 3417 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_4186_3
Type: CAZyme
Location: 3611 - 4867 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_4186_4
Type: CAZyme
Location: 4981 - 7584 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_4186_5
Type: pfam
Location: 7618 - 9117 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_4186_6
Type: TF
Location: 9367 - 10242 (+)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_4186_7
Type: CAZyme
Location: 10282 - 12210 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_4186_8
Type: TF
Location: 12336 - 14651 (+)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_4186_9
Type: CAZyme
Location: 14753 - 15781 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_4186_10
Type: STP
Location: 15902 - 17686 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_4186_11
Type: TC
Location: 17826 - 19574 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_4186_12
Type: TF
Location: 19804 - 20664 (+)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_4186_13
Type: sulfatase
Location: 20776 - 22230 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_4186_14
Type: TC
Location: 22413 - 24017 (-)
Gene ID: CokerMO_2019_SRR8692215_bin.31_k141_4186_15
Type: TC
Location: 24017 - 25369 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
Fimimorpha
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List