Cluster: CokerMO_2019_SRR8692194_bin.8_CGC24
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: CokerMO_2019_SRR8692194_bin.8
- CGC Family ID: CGCFAM_03664
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | CokerMO_2019_SRR8692194_bin.8_k141_15485 | CokerMO_2019_SRR8692194_bin.8_k141_15485_2 | 196 | 921 | - | 3.A.1.23.1 |
| pfam | CokerMO_2019_SRR8692194_bin.8_k141_15485 | CokerMO_2019_SRR8692194_bin.8_k141_15485_3 | 934 | 1722 | - | CbiQ |
| TC | CokerMO_2019_SRR8692194_bin.8_k141_15485 | CokerMO_2019_SRR8692194_bin.8_k141_15485_4 | 1715 | 2698 | - | 3.A.1.23.1 |
| TF | CokerMO_2019_SRR8692194_bin.8_k141_15485 | CokerMO_2019_SRR8692194_bin.8_k141_15485_5 | 2992 | 3441 | + | MarR |
| pfam | CokerMO_2019_SRR8692194_bin.8_k141_15485 | CokerMO_2019_SRR8692194_bin.8_k141_15485_6 | 3453 | 4313 | + | NmrA | NAD_binding_10 |
| TC | CokerMO_2019_SRR8692194_bin.8_k141_15485 | CokerMO_2019_SRR8692194_bin.8_k141_15485_7 | 4306 | 5034 | + | 3.A.1.12.8 |
| TC | CokerMO_2019_SRR8692194_bin.8_k141_15485 | CokerMO_2019_SRR8692194_bin.8_k141_15485_8 | 5027 | 6547 | + | 3.A.1.12.8 |
| peptidase | CokerMO_2019_SRR8692194_bin.8_k141_15485 | CokerMO_2019_SRR8692194_bin.8_k141_15485_9 | 6725 | 7420 | + | C26.UPW |
| CAZyme | CokerMO_2019_SRR8692194_bin.8_k141_15485 | CokerMO_2019_SRR8692194_bin.8_k141_15485_10 | 7555 | 8940 | + | GH1 |
Gene ID: CokerMO_2019_SRR8692194_bin.8_k141_15485_2
Type: TC
Location: 196 - 921 (-)
Type: TC
Location: 196 - 921 (-)
Gene ID: CokerMO_2019_SRR8692194_bin.8_k141_15485_3
Type: pfam
Location: 934 - 1722 (-)
Type: pfam
Location: 934 - 1722 (-)
Gene ID: CokerMO_2019_SRR8692194_bin.8_k141_15485_4
Type: TC
Location: 1715 - 2698 (-)
Type: TC
Location: 1715 - 2698 (-)
Gene ID: CokerMO_2019_SRR8692194_bin.8_k141_15485_5
Type: TF
Location: 2992 - 3441 (+)
Type: TF
Location: 2992 - 3441 (+)
Gene ID: CokerMO_2019_SRR8692194_bin.8_k141_15485_6
Type: pfam
Location: 3453 - 4313 (+)
Type: pfam
Location: 3453 - 4313 (+)
Gene ID: CokerMO_2019_SRR8692194_bin.8_k141_15485_7
Type: TC
Location: 4306 - 5034 (+)
Type: TC
Location: 4306 - 5034 (+)
Gene ID: CokerMO_2019_SRR8692194_bin.8_k141_15485_8
Type: TC
Location: 5027 - 6547 (+)
Type: TC
Location: 5027 - 6547 (+)
Gene ID: CokerMO_2019_SRR8692194_bin.8_k141_15485_9
Type: peptidase
Location: 6725 - 7420 (+)
Type: peptidase
Location: 6725 - 7420 (+)
Gene ID: CokerMO_2019_SRR8692194_bin.8_k141_15485_10
Type: CAZyme
Location: 7555 - 8940 (+)
Type: CAZyme
Location: 7555 - 8940 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.