Cluster: CokerMO_2019_SRR8692194_bin.8_CGC14
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 4
- Substrate: host glycan
- Genome ID: CokerMO_2019_SRR8692194_bin.8
- CGC Family ID: CGCFAM_00311
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | CokerMO_2019_SRR8692194_bin.8_k141_8478 | CokerMO_2019_SRR8692194_bin.8_k141_8478_4 | 2301 | 4376 | - | GH92 |
| CAZyme | CokerMO_2019_SRR8692194_bin.8_k141_8478 | CokerMO_2019_SRR8692194_bin.8_k141_8478_5 | 4592 | 5872 | + | GH125 |
| CAZyme | CokerMO_2019_SRR8692194_bin.8_k141_8478 | CokerMO_2019_SRR8692194_bin.8_k141_8478_6 | 6095 | 8740 | + | GH38 |
| pfam | CokerMO_2019_SRR8692194_bin.8_k141_8478 | CokerMO_2019_SRR8692194_bin.8_k141_8478_7 | 8831 | 9700 | + | ROK |
| CAZyme | CokerMO_2019_SRR8692194_bin.8_k141_8478 | CokerMO_2019_SRR8692194_bin.8_k141_8478_8 | 9694 | 11574 | + | GH20 |
| TC | CokerMO_2019_SRR8692194_bin.8_k141_8478 | CokerMO_2019_SRR8692194_bin.8_k141_8478_9 | 11801 | 12730 | + | 3.A.1.1.10 |
| TC | CokerMO_2019_SRR8692194_bin.8_k141_8478 | CokerMO_2019_SRR8692194_bin.8_k141_8478_10 | 12744 | 13676 | + | 3.A.1.1.29 |
| STP | CokerMO_2019_SRR8692194_bin.8_k141_8478 | CokerMO_2019_SRR8692194_bin.8_k141_8478_11 | 13756 | 15237 | + | SBP_bac_1 |
| TC | CokerMO_2019_SRR8692194_bin.8_k141_8478 | CokerMO_2019_SRR8692194_bin.8_k141_8478_12 | 15407 | 16018 | + | 9.B.28.1.12 |
| TC | CokerMO_2019_SRR8692194_bin.8_k141_8478 | CokerMO_2019_SRR8692194_bin.8_k141_8478_13 | 16021 | 17667 | + | 8.A.59.2.1 |
Gene ID: CokerMO_2019_SRR8692194_bin.8_k141_8478_4
Type: CAZyme
Location: 2301 - 4376 (-)
Type: CAZyme
Location: 2301 - 4376 (-)
Gene ID: CokerMO_2019_SRR8692194_bin.8_k141_8478_5
Type: CAZyme
Location: 4592 - 5872 (+)
Type: CAZyme
Location: 4592 - 5872 (+)
Gene ID: CokerMO_2019_SRR8692194_bin.8_k141_8478_6
Type: CAZyme
Location: 6095 - 8740 (+)
Type: CAZyme
Location: 6095 - 8740 (+)
Gene ID: CokerMO_2019_SRR8692194_bin.8_k141_8478_7
Type: pfam
Location: 8831 - 9700 (+)
Type: pfam
Location: 8831 - 9700 (+)
Gene ID: CokerMO_2019_SRR8692194_bin.8_k141_8478_8
Type: CAZyme
Location: 9694 - 11574 (+)
Type: CAZyme
Location: 9694 - 11574 (+)
Gene ID: CokerMO_2019_SRR8692194_bin.8_k141_8478_9
Type: TC
Location: 11801 - 12730 (+)
Type: TC
Location: 11801 - 12730 (+)
Gene ID: CokerMO_2019_SRR8692194_bin.8_k141_8478_10
Type: TC
Location: 12744 - 13676 (+)
Type: TC
Location: 12744 - 13676 (+)
Gene ID: CokerMO_2019_SRR8692194_bin.8_k141_8478_11
Type: STP
Location: 13756 - 15237 (+)
Type: STP
Location: 13756 - 15237 (+)
Gene ID: CokerMO_2019_SRR8692194_bin.8_k141_8478_12
Type: TC
Location: 15407 - 16018 (+)
Type: TC
Location: 15407 - 16018 (+)
Gene ID: CokerMO_2019_SRR8692194_bin.8_k141_8478_13
Type: TC
Location: 16021 - 17667 (+)
Type: TC
Location: 16021 - 17667 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.