Cluster: CokerMO_2019_SRR8692192_bin.4_CGC3
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: CokerMO_2019_SRR8692192_bin.4
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | CokerMO_2019_SRR8692192_bin.4_k141_1941 | CokerMO_2019_SRR8692192_bin.4_k141_1941_34 | 44805 | 46268 | - | 2.A.118.1.2 |
| TF | CokerMO_2019_SRR8692192_bin.4_k141_1941 | CokerMO_2019_SRR8692192_bin.4_k141_1941_35 | 46466 | 47200 | - | GntR |
| pfam | CokerMO_2019_SRR8692192_bin.4_k141_1941 | CokerMO_2019_SRR8692192_bin.4_k141_1941_36 | 47455 | 50208 | - | Sigma54_activat | PRD | EIIA-man |
| CAZyme | CokerMO_2019_SRR8692192_bin.4_k141_1941 | CokerMO_2019_SRR8692192_bin.4_k141_1941_37 | 50757 | 52193 | - | GH32 |
| pfam | CokerMO_2019_SRR8692192_bin.4_k141_1941 | CokerMO_2019_SRR8692192_bin.4_k141_1941_38 | 52223 | 52627 | - | EIIA-man |
| TC | CokerMO_2019_SRR8692192_bin.4_k141_1941 | CokerMO_2019_SRR8692192_bin.4_k141_1941_39 | 52661 | 53521 | - | 4.A.6.1.13 |
| TC | CokerMO_2019_SRR8692192_bin.4_k141_1941 | CokerMO_2019_SRR8692192_bin.4_k141_1941_40 | 53514 | 54287 | - | 4.A.6.1.13 |
| TC | CokerMO_2019_SRR8692192_bin.4_k141_1941 | CokerMO_2019_SRR8692192_bin.4_k141_1941_41 | 54303 | 54791 | - | 4.A.6.1.16 |
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_1941_34
Type: TC
Location: 44805 - 46268 (-)
Type: TC
Location: 44805 - 46268 (-)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_1941_35
Type: TF
Location: 46466 - 47200 (-)
Type: TF
Location: 46466 - 47200 (-)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_1941_36
Type: pfam
Location: 47455 - 50208 (-)
Type: pfam
Location: 47455 - 50208 (-)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_1941_37
Type: CAZyme
Location: 50757 - 52193 (-)
Type: CAZyme
Location: 50757 - 52193 (-)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_1941_38
Type: pfam
Location: 52223 - 52627 (-)
Type: pfam
Location: 52223 - 52627 (-)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_1941_39
Type: TC
Location: 52661 - 53521 (-)
Type: TC
Location: 52661 - 53521 (-)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_1941_40
Type: TC
Location: 53514 - 54287 (-)
Type: TC
Location: 53514 - 54287 (-)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_1941_41
Type: TC
Location: 54303 - 54791 (-)
Type: TC
Location: 54303 - 54791 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| CokerMO_2019_SRR8692192_bin.4_k141_1941_35 | vegan > omnivore | 1.68004 | 0.01057 |
| CokerMO_2019_SRR8692192_bin.4_k141_1941_35 | vegetarian > omnivore | 2.41889 | 0.03684 |
| CokerMO_2019_SRR8692192_bin.4_k141_1941_41 | vegetarian > omnivore | 1.51021 | 0.03684 |