Cluster: CokerMO_2019_SRR8692192_bin.4_CGC2
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: CokerMO_2019_SRR8692192_bin.4
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | CokerMO_2019_SRR8692192_bin.4_k141_1196 | CokerMO_2019_SRR8692192_bin.4_k141_1196_32 | 40085 | 40879 | - | 3.A.1.34.1 |
| TC | CokerMO_2019_SRR8692192_bin.4_k141_1196 | CokerMO_2019_SRR8692192_bin.4_k141_1196_33 | 40872 | 41795 | - | 3.A.1.34.1 |
| TC | CokerMO_2019_SRR8692192_bin.4_k141_1196 | CokerMO_2019_SRR8692192_bin.4_k141_1196_34 | 41999 | 42979 | - | 3.A.1.34.1 |
| NULL(UNKNOWN) | CokerMO_2019_SRR8692192_bin.4_k141_1196 | CokerMO_2019_SRR8692192_bin.4_k141_1196_35 | 43139 | 43927 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | CokerMO_2019_SRR8692192_bin.4_k141_1196 | CokerMO_2019_SRR8692192_bin.4_k141_1196_36 | 44186 | 45589 | - | tRNA-synt_2 | tRNA_anti-codon |
| TC | CokerMO_2019_SRR8692192_bin.4_k141_1196 | CokerMO_2019_SRR8692192_bin.4_k141_1196_37 | 45771 | 46334 | - | 4.A.1.2.6 |
| peptidase | CokerMO_2019_SRR8692192_bin.4_k141_1196 | CokerMO_2019_SRR8692192_bin.4_k141_1196_38 | 46578 | 47477 | + | S09.UPW |
| TC | CokerMO_2019_SRR8692192_bin.4_k141_1196 | CokerMO_2019_SRR8692192_bin.4_k141_1196_39 | 47951 | 50311 | + | 9.A.8.1.6 |
| TC | CokerMO_2019_SRR8692192_bin.4_k141_1196 | CokerMO_2019_SRR8692192_bin.4_k141_1196_40 | 50432 | 51628 | + | 2.A.1.2.18 |
| CAZyme | CokerMO_2019_SRR8692192_bin.4_k141_1196 | CokerMO_2019_SRR8692192_bin.4_k141_1196_41 | 51782 | 53158 | + | GH13_20 |
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_1196_32
Type: TC
Location: 40085 - 40879 (-)
Type: TC
Location: 40085 - 40879 (-)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_1196_33
Type: TC
Location: 40872 - 41795 (-)
Type: TC
Location: 40872 - 41795 (-)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_1196_34
Type: TC
Location: 41999 - 42979 (-)
Type: TC
Location: 41999 - 42979 (-)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_1196_35
Type:
Location: 43139 - 43927 (-)
Type:
Location: 43139 - 43927 (-)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_1196_36
Type: pfam
Location: 44186 - 45589 (-)
Type: pfam
Location: 44186 - 45589 (-)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_1196_37
Type: TC
Location: 45771 - 46334 (-)
Type: TC
Location: 45771 - 46334 (-)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_1196_38
Type: peptidase
Location: 46578 - 47477 (+)
Type: peptidase
Location: 46578 - 47477 (+)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_1196_39
Type: TC
Location: 47951 - 50311 (+)
Type: TC
Location: 47951 - 50311 (+)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_1196_40
Type: TC
Location: 50432 - 51628 (+)
Type: TC
Location: 50432 - 51628 (+)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_1196_41
Type: CAZyme
Location: 51782 - 53158 (+)
Type: CAZyme
Location: 51782 - 53158 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.