Cluster: CokerMO_2019_SRR8692192_bin.4_CGC18
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: CokerMO_2019_SRR8692192_bin.4
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | CokerMO_2019_SRR8692192_bin.4_k141_18991 | CokerMO_2019_SRR8692192_bin.4_k141_18991_11 | 14750 | 17200 | - | 4.A.1.1.8 |
| TF | CokerMO_2019_SRR8692192_bin.4_k141_18991 | CokerMO_2019_SRR8692192_bin.4_k141_18991_12 | 17430 | 18149 | + | GntR |
| TC | CokerMO_2019_SRR8692192_bin.4_k141_18991 | CokerMO_2019_SRR8692192_bin.4_k141_18991_13 | 18456 | 19772 | + | 3.A.1.1.45 |
| TC | CokerMO_2019_SRR8692192_bin.4_k141_18991 | CokerMO_2019_SRR8692192_bin.4_k141_18991_14 | 19860 | 20714 | + | 3.A.1.1.45 |
| TC | CokerMO_2019_SRR8692192_bin.4_k141_18991 | CokerMO_2019_SRR8692192_bin.4_k141_18991_15 | 20714 | 21553 | + | 3.A.1.1.45 |
| TC | CokerMO_2019_SRR8692192_bin.4_k141_18991 | CokerMO_2019_SRR8692192_bin.4_k141_18991_16 | 21622 | 22821 | + | 3.A.1.1.22 |
| CAZyme | CokerMO_2019_SRR8692192_bin.4_k141_18991 | CokerMO_2019_SRR8692192_bin.4_k141_18991_17 | 23118 | 25385 | - | GT35 |
| CAZyme | CokerMO_2019_SRR8692192_bin.4_k141_18991 | CokerMO_2019_SRR8692192_bin.4_k141_18991_18 | 25514 | 27019 | - | GH77 |
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_18991_11
Type: TC
Location: 14750 - 17200 (-)
Type: TC
Location: 14750 - 17200 (-)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_18991_12
Type: TF
Location: 17430 - 18149 (+)
Type: TF
Location: 17430 - 18149 (+)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_18991_13
Type: TC
Location: 18456 - 19772 (+)
Type: TC
Location: 18456 - 19772 (+)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_18991_14
Type: TC
Location: 19860 - 20714 (+)
Type: TC
Location: 19860 - 20714 (+)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_18991_15
Type: TC
Location: 20714 - 21553 (+)
Type: TC
Location: 20714 - 21553 (+)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_18991_16
Type: TC
Location: 21622 - 22821 (+)
Type: TC
Location: 21622 - 22821 (+)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_18991_17
Type: CAZyme
Location: 23118 - 25385 (-)
Type: CAZyme
Location: 23118 - 25385 (-)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_18991_18
Type: CAZyme
Location: 25514 - 27019 (-)
Type: CAZyme
Location: 25514 - 27019 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.