Cluster: CokerMO_2019_SRR8692192_bin.4_CGC17
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: CokerMO_2019_SRR8692192_bin.4
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | CokerMO_2019_SRR8692192_bin.4_k141_18067 | CokerMO_2019_SRR8692192_bin.4_k141_18067_22 | 22600 | 24000 | + | GH1 |
| TC | CokerMO_2019_SRR8692192_bin.4_k141_18067 | CokerMO_2019_SRR8692192_bin.4_k141_18067_23 | 24121 | 25464 | + | 4.A.3.2.9 |
| TC | CokerMO_2019_SRR8692192_bin.4_k141_18067 | CokerMO_2019_SRR8692192_bin.4_k141_18067_24 | 25626 | 25928 | + | 4.A.3.2.9 |
| TC | CokerMO_2019_SRR8692192_bin.4_k141_18067 | CokerMO_2019_SRR8692192_bin.4_k141_18067_25 | 25938 | 26270 | + | 4.A.3.2.3 |
| STP | CokerMO_2019_SRR8692192_bin.4_k141_18067 | CokerMO_2019_SRR8692192_bin.4_k141_18067_26 | 26512 | 27465 | + | Glucokinase |
| pfam | CokerMO_2019_SRR8692192_bin.4_k141_18067 | CokerMO_2019_SRR8692192_bin.4_k141_18067_27 | 27635 | 28558 | + | DHH | DHHA2 |
| TC | CokerMO_2019_SRR8692192_bin.4_k141_18067 | CokerMO_2019_SRR8692192_bin.4_k141_18067_28 | 28826 | 30184 | + | 2.A.33.1.1 |
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_18067_22
Type: CAZyme
Location: 22600 - 24000 (+)
Type: CAZyme
Location: 22600 - 24000 (+)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_18067_23
Type: TC
Location: 24121 - 25464 (+)
Type: TC
Location: 24121 - 25464 (+)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_18067_24
Type: TC
Location: 25626 - 25928 (+)
Type: TC
Location: 25626 - 25928 (+)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_18067_25
Type: TC
Location: 25938 - 26270 (+)
Type: TC
Location: 25938 - 26270 (+)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_18067_26
Type: STP
Location: 26512 - 27465 (+)
Type: STP
Location: 26512 - 27465 (+)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_18067_27
Type: pfam
Location: 27635 - 28558 (+)
Type: pfam
Location: 27635 - 28558 (+)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_18067_28
Type: TC
Location: 28826 - 30184 (+)
Type: TC
Location: 28826 - 30184 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| CokerMO_2019_SRR8692192_bin.4_k141_18067_24 | vegan > omnivore | 1.11710 | 0.01057 |