Cluster: CokerMO_2019_SRR8692192_bin.4_CGC15
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: CokerMO_2019_SRR8692192_bin.4
- CGC Family ID: CGCFAM_00486
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | CokerMO_2019_SRR8692192_bin.4_k141_17342 | CokerMO_2019_SRR8692192_bin.4_k141_17342_3 | 937 | 2733 | + | GH35 |
| TC | CokerMO_2019_SRR8692192_bin.4_k141_17342 | CokerMO_2019_SRR8692192_bin.4_k141_17342_4 | 2736 | 3200 | + | 4.A.6.1.18 |
| TC | CokerMO_2019_SRR8692192_bin.4_k141_17342 | CokerMO_2019_SRR8692192_bin.4_k141_17342_5 | 3294 | 4181 | + | 4.A.6.1.18 |
| TC | CokerMO_2019_SRR8692192_bin.4_k141_17342 | CokerMO_2019_SRR8692192_bin.4_k141_17342_6 | 4171 | 5010 | + | 4.A.6.1.18 |
| NULL(UNKNOWN) | CokerMO_2019_SRR8692192_bin.4_k141_17342 | CokerMO_2019_SRR8692192_bin.4_k141_17342_7 | 5199 | 5822 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | CokerMO_2019_SRR8692192_bin.4_k141_17342 | CokerMO_2019_SRR8692192_bin.4_k141_17342_8 | 5904 | 6332 | + | 4.A.6.1.8 |
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_17342_3
Type: CAZyme
Location: 937 - 2733 (+)
Type: CAZyme
Location: 937 - 2733 (+)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_17342_4
Type: TC
Location: 2736 - 3200 (+)
Type: TC
Location: 2736 - 3200 (+)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_17342_5
Type: TC
Location: 3294 - 4181 (+)
Type: TC
Location: 3294 - 4181 (+)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_17342_6
Type: TC
Location: 4171 - 5010 (+)
Type: TC
Location: 4171 - 5010 (+)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_17342_7
Type:
Location: 5199 - 5822 (+)
Type:
Location: 5199 - 5822 (+)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_17342_8
Type: TC
Location: 5904 - 6332 (+)
Type: TC
Location: 5904 - 6332 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| CokerMO_2019_SRR8692192_bin.4_k141_17342_3 | vegetarian > vegan | 2.71237 | 0.02517 |
| CokerMO_2019_SRR8692192_bin.4_k141_17342_4 | vegetarian > vegan | 3.33278 | 0.02517 |
| CokerMO_2019_SRR8692192_bin.4_k141_17342_6 | vegetarian > vegan | 2.43219 | 0.02517 |