Cluster: CokerMO_2019_SRR8692192_bin.4_CGC13
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate:
- Genome ID: CokerMO_2019_SRR8692192_bin.4
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | CokerMO_2019_SRR8692192_bin.4_k141_13120 | CokerMO_2019_SRR8692192_bin.4_k141_13120_10 | 9640 | 11061 | - | GH1 |
| TC | CokerMO_2019_SRR8692192_bin.4_k141_13120 | CokerMO_2019_SRR8692192_bin.4_k141_13120_11 | 11137 | 12915 | - | 4.A.3.1.1 |
| TF | CokerMO_2019_SRR8692192_bin.4_k141_13120 | CokerMO_2019_SRR8692192_bin.4_k141_13120_12 | 13192 | 14202 | + | LacI |
| TC | CokerMO_2019_SRR8692192_bin.4_k141_13120 | CokerMO_2019_SRR8692192_bin.4_k141_13120_13 | 14376 | 16136 | - | 4.A.3.1.1 |
| CAZyme | CokerMO_2019_SRR8692192_bin.4_k141_13120 | CokerMO_2019_SRR8692192_bin.4_k141_13120_14 | 16312 | 17754 | - | GH1 |
| TF | CokerMO_2019_SRR8692192_bin.4_k141_13120 | CokerMO_2019_SRR8692192_bin.4_k141_13120_15 | 18096 | 19133 | + | LacI |
| CAZyme | CokerMO_2019_SRR8692192_bin.4_k141_13120 | CokerMO_2019_SRR8692192_bin.4_k141_13120_16 | 19410 | 20849 | - | GH1 |
| TC | CokerMO_2019_SRR8692192_bin.4_k141_13120 | CokerMO_2019_SRR8692192_bin.4_k141_13120_17 | 20916 | 22682 | - | 4.A.3.1.1 |
| TF | CokerMO_2019_SRR8692192_bin.4_k141_13120 | CokerMO_2019_SRR8692192_bin.4_k141_13120_18 | 23040 | 24044 | + | LacI |
| TC | CokerMO_2019_SRR8692192_bin.4_k141_13120 | CokerMO_2019_SRR8692192_bin.4_k141_13120_19 | 24259 | 24597 | + | 4.A.3.1.2 |
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_13120_10
Type: CAZyme
Location: 9640 - 11061 (-)
Type: CAZyme
Location: 9640 - 11061 (-)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_13120_11
Type: TC
Location: 11137 - 12915 (-)
Type: TC
Location: 11137 - 12915 (-)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_13120_12
Type: TF
Location: 13192 - 14202 (+)
Type: TF
Location: 13192 - 14202 (+)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_13120_13
Type: TC
Location: 14376 - 16136 (-)
Type: TC
Location: 14376 - 16136 (-)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_13120_14
Type: CAZyme
Location: 16312 - 17754 (-)
Type: CAZyme
Location: 16312 - 17754 (-)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_13120_15
Type: TF
Location: 18096 - 19133 (+)
Type: TF
Location: 18096 - 19133 (+)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_13120_16
Type: CAZyme
Location: 19410 - 20849 (-)
Type: CAZyme
Location: 19410 - 20849 (-)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_13120_17
Type: TC
Location: 20916 - 22682 (-)
Type: TC
Location: 20916 - 22682 (-)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_13120_18
Type: TF
Location: 23040 - 24044 (+)
Type: TF
Location: 23040 - 24044 (+)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_13120_19
Type: TC
Location: 24259 - 24597 (+)
Type: TC
Location: 24259 - 24597 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| CokerMO_2019_SRR8692192_bin.4_k141_13120_15 | vegetarian > omnivore | 1.03436 | 0.02677 |