Cluster: CokerMO_2019_SRR8692192_bin.4_CGC12
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 3
- Substrate:
- Genome ID: CokerMO_2019_SRR8692192_bin.4
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | CokerMO_2019_SRR8692192_bin.4_k141_10665 | CokerMO_2019_SRR8692192_bin.4_k141_10665_3 | 2380 | 3846 | - | 2.A.66.2.23 |
| pfam | CokerMO_2019_SRR8692192_bin.4_k141_10665 | CokerMO_2019_SRR8692192_bin.4_k141_10665_4 | 3931 | 4878 | - | ATPgrasp_TupA |
| pfam | CokerMO_2019_SRR8692192_bin.4_k141_10665 | CokerMO_2019_SRR8692192_bin.4_k141_10665_5 | 5022 | 6110 | - | EpsG |
| CAZyme | CokerMO_2019_SRR8692192_bin.4_k141_10665 | CokerMO_2019_SRR8692192_bin.4_k141_10665_6 | 6107 | 7210 | - | GT4 |
| pfam | CokerMO_2019_SRR8692192_bin.4_k141_10665 | CokerMO_2019_SRR8692192_bin.4_k141_10665_7 | 7207 | 8154 | - | C5-epim_C |
| CAZyme | CokerMO_2019_SRR8692192_bin.4_k141_10665 | CokerMO_2019_SRR8692192_bin.4_k141_10665_8 | 8154 | 9446 | - | GT4 |
| pfam | CokerMO_2019_SRR8692192_bin.4_k141_10665 | CokerMO_2019_SRR8692192_bin.4_k141_10665_9 | 9452 | 10723 | - | UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N |
| CAZyme | CokerMO_2019_SRR8692192_bin.4_k141_10665 | CokerMO_2019_SRR8692192_bin.4_k141_10665_10 | 10767 | 11684 | - | GT2 |
| TC | CokerMO_2019_SRR8692192_bin.4_k141_10665 | CokerMO_2019_SRR8692192_bin.4_k141_10665_11 | 11688 | 12452 | - | 9.B.18.1.2 |
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_10665_3
Type: TC
Location: 2380 - 3846 (-)
Type: TC
Location: 2380 - 3846 (-)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_10665_4
Type: pfam
Location: 3931 - 4878 (-)
Type: pfam
Location: 3931 - 4878 (-)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_10665_5
Type: pfam
Location: 5022 - 6110 (-)
Type: pfam
Location: 5022 - 6110 (-)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_10665_6
Type: CAZyme
Location: 6107 - 7210 (-)
Type: CAZyme
Location: 6107 - 7210 (-)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_10665_7
Type: pfam
Location: 7207 - 8154 (-)
Type: pfam
Location: 7207 - 8154 (-)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_10665_8
Type: CAZyme
Location: 8154 - 9446 (-)
Type: CAZyme
Location: 8154 - 9446 (-)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_10665_9
Type: pfam
Location: 9452 - 10723 (-)
Type: pfam
Location: 9452 - 10723 (-)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_10665_10
Type: CAZyme
Location: 10767 - 11684 (-)
Type: CAZyme
Location: 10767 - 11684 (-)
Gene ID: CokerMO_2019_SRR8692192_bin.4_k141_10665_11
Type: TC
Location: 11688 - 12452 (-)
Type: TC
Location: 11688 - 12452 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.