Cluster: CokerMO_2019_SRR8692191_bin.3_CGC8
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: CokerMO_2019_SRR8692191_bin.3
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | CokerMO_2019_SRR8692191_bin.3_k141_5529 | CokerMO_2019_SRR8692191_bin.3_k141_5529_13 | 7769 | 9553 | + | GH23 |
| TF | CokerMO_2019_SRR8692191_bin.3_k141_5529 | CokerMO_2019_SRR8692191_bin.3_k141_5529_14 | 9751 | 10074 | - | Trans_reg_C |
| TF | CokerMO_2019_SRR8692191_bin.3_k141_5529 | CokerMO_2019_SRR8692191_bin.3_k141_5529_15 | 10170 | 10562 | - | Fe_dep_repress |
| TC | CokerMO_2019_SRR8692191_bin.3_k141_5529 | CokerMO_2019_SRR8692191_bin.3_k141_5529_16 | 10574 | 12283 | - | 3.A.1.21.1 |
| TC | CokerMO_2019_SRR8692191_bin.3_k141_5529 | CokerMO_2019_SRR8692191_bin.3_k141_5529_17 | 12270 | 14039 | - | 3.A.1.106.14 |
| TC | CokerMO_2019_SRR8692191_bin.3_k141_5529 | CokerMO_2019_SRR8692191_bin.3_k141_5529_18 | 14036 | 15508 | - | 3.A.1.31.2 |
| TC | CokerMO_2019_SRR8692191_bin.3_k141_5529 | CokerMO_2019_SRR8692191_bin.3_k141_5529_19 | 15505 | 16233 | - | 3.A.1.31.1 |
Gene ID: CokerMO_2019_SRR8692191_bin.3_k141_5529_13
Type: CAZyme
Location: 7769 - 9553 (+)
Type: CAZyme
Location: 7769 - 9553 (+)
Gene ID: CokerMO_2019_SRR8692191_bin.3_k141_5529_14
Type: TF
Location: 9751 - 10074 (-)
Type: TF
Location: 9751 - 10074 (-)
Gene ID: CokerMO_2019_SRR8692191_bin.3_k141_5529_15
Type: TF
Location: 10170 - 10562 (-)
Type: TF
Location: 10170 - 10562 (-)
Gene ID: CokerMO_2019_SRR8692191_bin.3_k141_5529_16
Type: TC
Location: 10574 - 12283 (-)
Type: TC
Location: 10574 - 12283 (-)
Gene ID: CokerMO_2019_SRR8692191_bin.3_k141_5529_17
Type: TC
Location: 12270 - 14039 (-)
Type: TC
Location: 12270 - 14039 (-)
Gene ID: CokerMO_2019_SRR8692191_bin.3_k141_5529_18
Type: TC
Location: 14036 - 15508 (-)
Type: TC
Location: 14036 - 15508 (-)
Gene ID: CokerMO_2019_SRR8692191_bin.3_k141_5529_19
Type: TC
Location: 15505 - 16233 (-)
Type: TC
Location: 15505 - 16233 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Massilistercora
Species
Massilistercora sp902406105
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| CokerMO_2019_SRR8692191_bin.3_k141_5529_17 | vegetarian > vegan | 1.31421 | 0.00364 |
| CokerMO_2019_SRR8692191_bin.3_k141_5529_18 | vegetarian > vegan | 2.53666 | 0.00364 |
| CokerMO_2019_SRR8692191_bin.3_k141_5529_19 | vegetarian > vegan | 2.09018 | 0.00364 |