Cluster: CokerMO_2019_SRR8692182_bin.24_CGC9
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: CokerMO_2019_SRR8692182_bin.24
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | CokerMO_2019_SRR8692182_bin.24_k141_11161 | CokerMO_2019_SRR8692182_bin.24_k141_11161_5 | 5758 | 6084 | + | 4.A.3.2.7 |
| TC | CokerMO_2019_SRR8692182_bin.24_k141_11161 | CokerMO_2019_SRR8692182_bin.24_k141_11161_6 | 6131 | 6424 | + | 4.A.3.2.6 |
| TC | CokerMO_2019_SRR8692182_bin.24_k141_11161 | CokerMO_2019_SRR8692182_bin.24_k141_11161_7 | 6434 | 7783 | + | 4.A.3.2.6 |
| CAZyme | CokerMO_2019_SRR8692182_bin.24_k141_11161 | CokerMO_2019_SRR8692182_bin.24_k141_11161_8 | 7785 | 9239 | + | GH1 |
| pfam | CokerMO_2019_SRR8692182_bin.24_k141_11161 | CokerMO_2019_SRR8692182_bin.24_k141_11161_9 | 9693 | 10823 | - | Peptidase_C70 | Peptidase_C39_2 |
| TC | CokerMO_2019_SRR8692182_bin.24_k141_11161 | CokerMO_2019_SRR8692182_bin.24_k141_11161_10 | 11021 | 12499 | - | 2.A.118.1.1 |
| pfam | CokerMO_2019_SRR8692182_bin.24_k141_11161 | CokerMO_2019_SRR8692182_bin.24_k141_11161_11 | 12931 | 13938 | - | 2-Hacid_dh | 2-Hacid_dh_C |
| pfam | CokerMO_2019_SRR8692182_bin.24_k141_11161 | CokerMO_2019_SRR8692182_bin.24_k141_11161_12 | 14060 | 14917 | - | ADI | ADI | DDAH_eukar |
| TC | CokerMO_2019_SRR8692182_bin.24_k141_11161 | CokerMO_2019_SRR8692182_bin.24_k141_11161_13 | 15030 | 16547 | - | 2.A.118.1.6 |
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_11161_5
Type: TC
Location: 5758 - 6084 (+)
Type: TC
Location: 5758 - 6084 (+)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_11161_6
Type: TC
Location: 6131 - 6424 (+)
Type: TC
Location: 6131 - 6424 (+)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_11161_7
Type: TC
Location: 6434 - 7783 (+)
Type: TC
Location: 6434 - 7783 (+)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_11161_8
Type: CAZyme
Location: 7785 - 9239 (+)
Type: CAZyme
Location: 7785 - 9239 (+)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_11161_9
Type: pfam
Location: 9693 - 10823 (-)
Type: pfam
Location: 9693 - 10823 (-)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_11161_10
Type: TC
Location: 11021 - 12499 (-)
Type: TC
Location: 11021 - 12499 (-)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_11161_11
Type: pfam
Location: 12931 - 13938 (-)
Type: pfam
Location: 12931 - 13938 (-)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_11161_12
Type: pfam
Location: 14060 - 14917 (-)
Type: pfam
Location: 14060 - 14917 (-)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_11161_13
Type: TC
Location: 15030 - 16547 (-)
Type: TC
Location: 15030 - 16547 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900761805
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| CokerMO_2019_SRR8692182_bin.24_k141_11161_5 | vegetarian > vegan | 1.30216 | 0.02991 |
| CokerMO_2019_SRR8692182_bin.24_k141_11161_6 | vegetarian > vegan | 2.05267 | 0.02550 |
| CokerMO_2019_SRR8692182_bin.24_k141_11161_7 | vegetarian > vegan | 1.81615 | 0.02550 |
| CokerMO_2019_SRR8692182_bin.24_k141_11161_8 | vegetarian > vegan | 2.08054 | 0.01080 |