Cluster: CokerMO_2019_SRR8692182_bin.24_CGC7
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: CokerMO_2019_SRR8692182_bin.24
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | CokerMO_2019_SRR8692182_bin.24_k141_4332 | CokerMO_2019_SRR8692182_bin.24_k141_4332_30 | 26689 | 28422 | - | GH13_30 |
| STP | CokerMO_2019_SRR8692182_bin.24_k141_4332 | CokerMO_2019_SRR8692182_bin.24_k141_4332_31 | 29007 | 29753 | - | STAS |
| STP | CokerMO_2019_SRR8692182_bin.24_k141_4332 | CokerMO_2019_SRR8692182_bin.24_k141_4332_32 | 29835 | 32180 | - | GAF | SpoIIE |
| TC | CokerMO_2019_SRR8692182_bin.24_k141_4332 | CokerMO_2019_SRR8692182_bin.24_k141_4332_33 | 32927 | 33955 | - | 3.A.1.5.36 |
| TC | CokerMO_2019_SRR8692182_bin.24_k141_4332 | CokerMO_2019_SRR8692182_bin.24_k141_4332_34 | 33955 | 35046 | - | 3.A.1.5.36 |
| TC | CokerMO_2019_SRR8692182_bin.24_k141_4332 | CokerMO_2019_SRR8692182_bin.24_k141_4332_35 | 35049 | 35984 | - | 3.A.1.5.11 |
| TC | CokerMO_2019_SRR8692182_bin.24_k141_4332 | CokerMO_2019_SRR8692182_bin.24_k141_4332_36 | 35999 | 37036 | - | 3.A.1.5.37 |
| TC | CokerMO_2019_SRR8692182_bin.24_k141_4332 | CokerMO_2019_SRR8692182_bin.24_k141_4332_37 | 37193 | 38869 | - | 3.A.1.5.35 |
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_4332_30
Type: CAZyme
Location: 26689 - 28422 (-)
Type: CAZyme
Location: 26689 - 28422 (-)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_4332_31
Type: STP
Location: 29007 - 29753 (-)
Type: STP
Location: 29007 - 29753 (-)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_4332_32
Type: STP
Location: 29835 - 32180 (-)
Type: STP
Location: 29835 - 32180 (-)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_4332_33
Type: TC
Location: 32927 - 33955 (-)
Type: TC
Location: 32927 - 33955 (-)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_4332_34
Type: TC
Location: 33955 - 35046 (-)
Type: TC
Location: 33955 - 35046 (-)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_4332_35
Type: TC
Location: 35049 - 35984 (-)
Type: TC
Location: 35049 - 35984 (-)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_4332_36
Type: TC
Location: 35999 - 37036 (-)
Type: TC
Location: 35999 - 37036 (-)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_4332_37
Type: TC
Location: 37193 - 38869 (-)
Type: TC
Location: 37193 - 38869 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900761805
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.