Cluster: CokerMO_2019_SRR8692182_bin.24_CGC5
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: CokerMO_2019_SRR8692182_bin.24
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | CokerMO_2019_SRR8692182_bin.24_k141_2665 | CokerMO_2019_SRR8692182_bin.24_k141_2665_101 | 112750 | 114108 | - | 2.A.33.1.1 |
| pfam | CokerMO_2019_SRR8692182_bin.24_k141_2665 | CokerMO_2019_SRR8692182_bin.24_k141_2665_102 | 114377 | 115300 | - | DHH | DHHA2 |
| STP | CokerMO_2019_SRR8692182_bin.24_k141_2665 | CokerMO_2019_SRR8692182_bin.24_k141_2665_103 | 115468 | 116421 | - | Glucokinase |
| TC | CokerMO_2019_SRR8692182_bin.24_k141_2665 | CokerMO_2019_SRR8692182_bin.24_k141_2665_104 | 116663 | 116995 | - | 4.A.3.2.3 |
| TC | CokerMO_2019_SRR8692182_bin.24_k141_2665 | CokerMO_2019_SRR8692182_bin.24_k141_2665_105 | 117005 | 117307 | - | 4.A.3.2.9 |
| TC | CokerMO_2019_SRR8692182_bin.24_k141_2665 | CokerMO_2019_SRR8692182_bin.24_k141_2665_106 | 117469 | 118812 | - | 4.A.3.2.9 |
| CAZyme | CokerMO_2019_SRR8692182_bin.24_k141_2665 | CokerMO_2019_SRR8692182_bin.24_k141_2665_107 | 118933 | 120333 | - | GH1 |
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_2665_101
Type: TC
Location: 112750 - 114108 (-)
Type: TC
Location: 112750 - 114108 (-)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_2665_102
Type: pfam
Location: 114377 - 115300 (-)
Type: pfam
Location: 114377 - 115300 (-)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_2665_103
Type: STP
Location: 115468 - 116421 (-)
Type: STP
Location: 115468 - 116421 (-)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_2665_104
Type: TC
Location: 116663 - 116995 (-)
Type: TC
Location: 116663 - 116995 (-)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_2665_105
Type: TC
Location: 117005 - 117307 (-)
Type: TC
Location: 117005 - 117307 (-)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_2665_106
Type: TC
Location: 117469 - 118812 (-)
Type: TC
Location: 117469 - 118812 (-)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_2665_107
Type: CAZyme
Location: 118933 - 120333 (-)
Type: CAZyme
Location: 118933 - 120333 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900761805
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.