Cluster: CokerMO_2019_SRR8692182_bin.24_CGC4
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: CokerMO_2019_SRR8692182_bin.24
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | CokerMO_2019_SRR8692182_bin.24_k141_2665 | CokerMO_2019_SRR8692182_bin.24_k141_2665_69 | 81598 | 82767 | - | CE9 |
| STP | CokerMO_2019_SRR8692182_bin.24_k141_2665 | CokerMO_2019_SRR8692182_bin.24_k141_2665_70 | 82887 | 84053 | - | SIS | SIS |
| TF | CokerMO_2019_SRR8692182_bin.24_k141_2665 | CokerMO_2019_SRR8692182_bin.24_k141_2665_71 | 84168 | 84899 | - | GntR |
| TC | CokerMO_2019_SRR8692182_bin.24_k141_2665 | CokerMO_2019_SRR8692182_bin.24_k141_2665_72 | 85084 | 86166 | - | 4.A.6.1.4 |
| TC | CokerMO_2019_SRR8692182_bin.24_k141_2665 | CokerMO_2019_SRR8692182_bin.24_k141_2665_73 | 86156 | 86956 | - | 4.A.6.1.4 |
| TC | CokerMO_2019_SRR8692182_bin.24_k141_2665 | CokerMO_2019_SRR8692182_bin.24_k141_2665_74 | 87044 | 87526 | - | 4.A.6.1.4 |
| pfam | CokerMO_2019_SRR8692182_bin.24_k141_2665 | CokerMO_2019_SRR8692182_bin.24_k141_2665_75 | 87563 | 87844 | - | YajC |
| TC | CokerMO_2019_SRR8692182_bin.24_k141_2665 | CokerMO_2019_SRR8692182_bin.24_k141_2665_76 | 87844 | 88287 | - | 4.A.6.1.16 |
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_2665_69
Type: CAZyme
Location: 81598 - 82767 (-)
Type: CAZyme
Location: 81598 - 82767 (-)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_2665_70
Type: STP
Location: 82887 - 84053 (-)
Type: STP
Location: 82887 - 84053 (-)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_2665_71
Type: TF
Location: 84168 - 84899 (-)
Type: TF
Location: 84168 - 84899 (-)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_2665_72
Type: TC
Location: 85084 - 86166 (-)
Type: TC
Location: 85084 - 86166 (-)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_2665_73
Type: TC
Location: 86156 - 86956 (-)
Type: TC
Location: 86156 - 86956 (-)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_2665_74
Type: TC
Location: 87044 - 87526 (-)
Type: TC
Location: 87044 - 87526 (-)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_2665_75
Type: pfam
Location: 87563 - 87844 (-)
Type: pfam
Location: 87563 - 87844 (-)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_2665_76
Type: TC
Location: 87844 - 88287 (-)
Type: TC
Location: 87844 - 88287 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900761805
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| CokerMO_2019_SRR8692182_bin.24_k141_2665_75 | vegan > omnivore | 1.03136 | 0.00863 |