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Cluster: CokerMO_2019_SRR8692182_bin.24_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC CokerMO_2019_SRR8692182_bin.24_k141_2665 CokerMO_2019_SRR8692182_bin.24_k141_2665_47 53499 53837 - 4.A.3.1.2
TF CokerMO_2019_SRR8692182_bin.24_k141_2665 CokerMO_2019_SRR8692182_bin.24_k141_2665_48 54052 55056 - LacI
TC CokerMO_2019_SRR8692182_bin.24_k141_2665 CokerMO_2019_SRR8692182_bin.24_k141_2665_49 55414 57180 + 4.A.3.1.1
CAZyme CokerMO_2019_SRR8692182_bin.24_k141_2665 CokerMO_2019_SRR8692182_bin.24_k141_2665_50 57247 58686 + GH1
TF CokerMO_2019_SRR8692182_bin.24_k141_2665 CokerMO_2019_SRR8692182_bin.24_k141_2665_51 58954 59991 - LacI
CAZyme CokerMO_2019_SRR8692182_bin.24_k141_2665 CokerMO_2019_SRR8692182_bin.24_k141_2665_52 60333 61775 + GH1
TC CokerMO_2019_SRR8692182_bin.24_k141_2665 CokerMO_2019_SRR8692182_bin.24_k141_2665_53 61949 63709 + 4.A.3.1.1
TF CokerMO_2019_SRR8692182_bin.24_k141_2665 CokerMO_2019_SRR8692182_bin.24_k141_2665_54 64128 65138 - LacI
TC CokerMO_2019_SRR8692182_bin.24_k141_2665 CokerMO_2019_SRR8692182_bin.24_k141_2665_55 65415 67211 + 4.A.3.1.1
CAZyme CokerMO_2019_SRR8692182_bin.24_k141_2665 CokerMO_2019_SRR8692182_bin.24_k141_2665_56 67288 68709 + GH1
pfam CokerMO_2019_SRR8692182_bin.24_k141_2665 CokerMO_2019_SRR8692182_bin.24_k141_2665_57 69079 70311 + Fic
STP CokerMO_2019_SRR8692182_bin.24_k141_2665 CokerMO_2019_SRR8692182_bin.24_k141_2665_58 70308 70688 - DeoRC
TC CokerMO_2019_SRR8692182_bin.24_k141_2665 CokerMO_2019_SRR8692182_bin.24_k141_2665_59 70851 72545 - 4.A.3.1.1
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_2665_47
Type: TC
Location: 53499 - 53837 (-)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_2665_48
Type: TF
Location: 54052 - 55056 (-)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_2665_49
Type: TC
Location: 55414 - 57180 (+)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_2665_50
Type: CAZyme
Location: 57247 - 58686 (+)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_2665_51
Type: TF
Location: 58954 - 59991 (-)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_2665_52
Type: CAZyme
Location: 60333 - 61775 (+)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_2665_53
Type: TC
Location: 61949 - 63709 (+)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_2665_54
Type: TF
Location: 64128 - 65138 (-)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_2665_55
Type: TC
Location: 65415 - 67211 (+)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_2665_56
Type: CAZyme
Location: 67288 - 68709 (+)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_2665_57
Type: pfam
Location: 69079 - 70311 (+)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_2665_58
Type: STP
Location: 70308 - 70688 (-)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_2665_59
Type: TC
Location: 70851 - 72545 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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