Cluster: CokerMO_2019_SRR8692182_bin.24_CGC2
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: CokerMO_2019_SRR8692182_bin.24
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | CokerMO_2019_SRR8692182_bin.24_k141_1615 | CokerMO_2019_SRR8692182_bin.24_k141_1615_62 | 66793 | 68169 | - | GH13_20 |
| TC | CokerMO_2019_SRR8692182_bin.24_k141_1615 | CokerMO_2019_SRR8692182_bin.24_k141_1615_63 | 68323 | 69519 | - | 2.A.1.2.18 |
| TC | CokerMO_2019_SRR8692182_bin.24_k141_1615 | CokerMO_2019_SRR8692182_bin.24_k141_1615_64 | 69640 | 72000 | - | 9.A.8.1.6 |
| peptidase | CokerMO_2019_SRR8692182_bin.24_k141_1615 | CokerMO_2019_SRR8692182_bin.24_k141_1615_65 | 72474 | 73373 | - | S09.UPW |
| TC | CokerMO_2019_SRR8692182_bin.24_k141_1615 | CokerMO_2019_SRR8692182_bin.24_k141_1615_66 | 73617 | 74180 | + | 4.A.1.2.6 |
| pfam | CokerMO_2019_SRR8692182_bin.24_k141_1615 | CokerMO_2019_SRR8692182_bin.24_k141_1615_67 | 74358 | 75761 | + | tRNA-synt_2 | tRNA_anti-codon |
| NULL(UNKNOWN) | CokerMO_2019_SRR8692182_bin.24_k141_1615 | CokerMO_2019_SRR8692182_bin.24_k141_1615_68 | 76020 | 76805 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | CokerMO_2019_SRR8692182_bin.24_k141_1615 | CokerMO_2019_SRR8692182_bin.24_k141_1615_69 | 76966 | 77946 | + | 3.A.1.34.1 |
| TC | CokerMO_2019_SRR8692182_bin.24_k141_1615 | CokerMO_2019_SRR8692182_bin.24_k141_1615_70 | 78150 | 79073 | + | 3.A.1.34.1 |
| TC | CokerMO_2019_SRR8692182_bin.24_k141_1615 | CokerMO_2019_SRR8692182_bin.24_k141_1615_71 | 79066 | 79860 | + | 3.A.1.34.1 |
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_1615_62
Type: CAZyme
Location: 66793 - 68169 (-)
Type: CAZyme
Location: 66793 - 68169 (-)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_1615_63
Type: TC
Location: 68323 - 69519 (-)
Type: TC
Location: 68323 - 69519 (-)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_1615_64
Type: TC
Location: 69640 - 72000 (-)
Type: TC
Location: 69640 - 72000 (-)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_1615_65
Type: peptidase
Location: 72474 - 73373 (-)
Type: peptidase
Location: 72474 - 73373 (-)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_1615_66
Type: TC
Location: 73617 - 74180 (+)
Type: TC
Location: 73617 - 74180 (+)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_1615_67
Type: pfam
Location: 74358 - 75761 (+)
Type: pfam
Location: 74358 - 75761 (+)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_1615_68
Type:
Location: 76020 - 76805 (+)
Type:
Location: 76020 - 76805 (+)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_1615_69
Type: TC
Location: 76966 - 77946 (+)
Type: TC
Location: 76966 - 77946 (+)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_1615_70
Type: TC
Location: 78150 - 79073 (+)
Type: TC
Location: 78150 - 79073 (+)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_1615_71
Type: TC
Location: 79066 - 79860 (+)
Type: TC
Location: 79066 - 79860 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900761805
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.