Cluster: CokerMO_2019_SRR8692182_bin.24_CGC11
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: CokerMO_2019_SRR8692182_bin.24
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | CokerMO_2019_SRR8692182_bin.24_k141_13766 | CokerMO_2019_SRR8692182_bin.24_k141_13766_8 | 8751 | 9770 | + | 9.B.146.1.6 |
| pfam | CokerMO_2019_SRR8692182_bin.24_k141_13766 | CokerMO_2019_SRR8692182_bin.24_k141_13766_9 | 9780 | 11186 | + | Mur_ligase_C | Mur_ligase_M |
| TC | CokerMO_2019_SRR8692182_bin.24_k141_13766 | CokerMO_2019_SRR8692182_bin.24_k141_13766_10 | 11223 | 12716 | + | 2.A.103.1.1 |
| CAZyme | CokerMO_2019_SRR8692182_bin.24_k141_13766 | CokerMO_2019_SRR8692182_bin.24_k141_13766_11 | 12706 | 13821 | + | GT28 |
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_13766_8
Type: TC
Location: 8751 - 9770 (+)
Type: TC
Location: 8751 - 9770 (+)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_13766_9
Type: pfam
Location: 9780 - 11186 (+)
Type: pfam
Location: 9780 - 11186 (+)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_13766_10
Type: TC
Location: 11223 - 12716 (+)
Type: TC
Location: 11223 - 12716 (+)
Gene ID: CokerMO_2019_SRR8692182_bin.24_k141_13766_11
Type: CAZyme
Location: 12706 - 13821 (+)
Type: CAZyme
Location: 12706 - 13821 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900761805
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.