Cluster: ChuDM_2017_SRR8942429_bin.10_CGC6
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: ChuDM_2017_SRR8942429_bin.10
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ChuDM_2017_SRR8942429_bin.10_k119_10751 | ChuDM_2017_SRR8942429_bin.10_k119_10751_264 | 317613 | 318989 | - | GH13_20 |
| TC | ChuDM_2017_SRR8942429_bin.10_k119_10751 | ChuDM_2017_SRR8942429_bin.10_k119_10751_265 | 319172 | 320368 | - | 2.A.1.2.18 |
| TC | ChuDM_2017_SRR8942429_bin.10_k119_10751 | ChuDM_2017_SRR8942429_bin.10_k119_10751_266 | 320494 | 322854 | - | 9.A.8.1.6 |
| NULL(UNKNOWN) | ChuDM_2017_SRR8942429_bin.10_k119_10751 | ChuDM_2017_SRR8942429_bin.10_k119_10751_267 | 322976 | 323296 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| peptidase | ChuDM_2017_SRR8942429_bin.10_k119_10751 | ChuDM_2017_SRR8942429_bin.10_k119_10751_268 | 323344 | 324243 | - | S09.UPW |
| TC | ChuDM_2017_SRR8942429_bin.10_k119_10751 | ChuDM_2017_SRR8942429_bin.10_k119_10751_269 | 324490 | 325053 | + | 4.A.1.2.6 |
| pfam | ChuDM_2017_SRR8942429_bin.10_k119_10751 | ChuDM_2017_SRR8942429_bin.10_k119_10751_270 | 325235 | 326638 | + | tRNA-synt_2 | tRNA_anti-codon |
| NULL(UNKNOWN) | ChuDM_2017_SRR8942429_bin.10_k119_10751 | ChuDM_2017_SRR8942429_bin.10_k119_10751_271 | 326897 | 327685 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ChuDM_2017_SRR8942429_bin.10_k119_10751 | ChuDM_2017_SRR8942429_bin.10_k119_10751_272 | 327845 | 328825 | + | 3.A.1.34.1 |
| TC | ChuDM_2017_SRR8942429_bin.10_k119_10751 | ChuDM_2017_SRR8942429_bin.10_k119_10751_273 | 329030 | 329953 | + | 3.A.1.34.1 |
| TC | ChuDM_2017_SRR8942429_bin.10_k119_10751 | ChuDM_2017_SRR8942429_bin.10_k119_10751_274 | 329946 | 330740 | + | 3.A.1.34.1 |
Gene ID: ChuDM_2017_SRR8942429_bin.10_k119_10751_264
Type: CAZyme
Location: 317613 - 318989 (-)
Type: CAZyme
Location: 317613 - 318989 (-)
Gene ID: ChuDM_2017_SRR8942429_bin.10_k119_10751_265
Type: TC
Location: 319172 - 320368 (-)
Type: TC
Location: 319172 - 320368 (-)
Gene ID: ChuDM_2017_SRR8942429_bin.10_k119_10751_266
Type: TC
Location: 320494 - 322854 (-)
Type: TC
Location: 320494 - 322854 (-)
Gene ID: ChuDM_2017_SRR8942429_bin.10_k119_10751_267
Type:
Location: 322976 - 323296 (-)
Type:
Location: 322976 - 323296 (-)
Gene ID: ChuDM_2017_SRR8942429_bin.10_k119_10751_268
Type: peptidase
Location: 323344 - 324243 (-)
Type: peptidase
Location: 323344 - 324243 (-)
Gene ID: ChuDM_2017_SRR8942429_bin.10_k119_10751_269
Type: TC
Location: 324490 - 325053 (+)
Type: TC
Location: 324490 - 325053 (+)
Gene ID: ChuDM_2017_SRR8942429_bin.10_k119_10751_270
Type: pfam
Location: 325235 - 326638 (+)
Type: pfam
Location: 325235 - 326638 (+)
Gene ID: ChuDM_2017_SRR8942429_bin.10_k119_10751_271
Type:
Location: 326897 - 327685 (+)
Type:
Location: 326897 - 327685 (+)
Gene ID: ChuDM_2017_SRR8942429_bin.10_k119_10751_272
Type: TC
Location: 327845 - 328825 (+)
Type: TC
Location: 327845 - 328825 (+)
Gene ID: ChuDM_2017_SRR8942429_bin.10_k119_10751_273
Type: TC
Location: 329030 - 329953 (+)
Type: TC
Location: 329030 - 329953 (+)
Gene ID: ChuDM_2017_SRR8942429_bin.10_k119_10751_274
Type: TC
Location: 329946 - 330740 (+)
Type: TC
Location: 329946 - 330740 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.