Cluster: ChuDM_2017_SRR8942429_bin.10_CGC4
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ChuDM_2017_SRR8942429_bin.10
- CGC Family ID: CGCFAM_09244
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ChuDM_2017_SRR8942429_bin.10_k119_8732 | ChuDM_2017_SRR8942429_bin.10_k119_8732_44 | 54304 | 54792 | + | 4.A.6.1.16 |
| TC | ChuDM_2017_SRR8942429_bin.10_k119_8732 | ChuDM_2017_SRR8942429_bin.10_k119_8732_45 | 54808 | 55581 | + | 4.A.6.1.13 |
| TC | ChuDM_2017_SRR8942429_bin.10_k119_8732 | ChuDM_2017_SRR8942429_bin.10_k119_8732_46 | 55574 | 56434 | + | 4.A.6.1.13 |
| pfam | ChuDM_2017_SRR8942429_bin.10_k119_8732 | ChuDM_2017_SRR8942429_bin.10_k119_8732_47 | 56468 | 56872 | + | EIIA-man |
| CAZyme | ChuDM_2017_SRR8942429_bin.10_k119_8732 | ChuDM_2017_SRR8942429_bin.10_k119_8732_48 | 56902 | 58338 | + | GH32 |
| pfam | ChuDM_2017_SRR8942429_bin.10_k119_8732 | ChuDM_2017_SRR8942429_bin.10_k119_8732_49 | 58887 | 61640 | + | Sigma54_activat | PRD | EIIA-man |
| TF | ChuDM_2017_SRR8942429_bin.10_k119_8732 | ChuDM_2017_SRR8942429_bin.10_k119_8732_50 | 61895 | 62629 | + | GntR |
| TC | ChuDM_2017_SRR8942429_bin.10_k119_8732 | ChuDM_2017_SRR8942429_bin.10_k119_8732_51 | 62827 | 64290 | + | 2.A.118.1.2 |
Gene ID: ChuDM_2017_SRR8942429_bin.10_k119_8732_44
Type: TC
Location: 54304 - 54792 (+)
Type: TC
Location: 54304 - 54792 (+)
Gene ID: ChuDM_2017_SRR8942429_bin.10_k119_8732_45
Type: TC
Location: 54808 - 55581 (+)
Type: TC
Location: 54808 - 55581 (+)
Gene ID: ChuDM_2017_SRR8942429_bin.10_k119_8732_46
Type: TC
Location: 55574 - 56434 (+)
Type: TC
Location: 55574 - 56434 (+)
Gene ID: ChuDM_2017_SRR8942429_bin.10_k119_8732_47
Type: pfam
Location: 56468 - 56872 (+)
Type: pfam
Location: 56468 - 56872 (+)
Gene ID: ChuDM_2017_SRR8942429_bin.10_k119_8732_48
Type: CAZyme
Location: 56902 - 58338 (+)
Type: CAZyme
Location: 56902 - 58338 (+)
Gene ID: ChuDM_2017_SRR8942429_bin.10_k119_8732_49
Type: pfam
Location: 58887 - 61640 (+)
Type: pfam
Location: 58887 - 61640 (+)
Gene ID: ChuDM_2017_SRR8942429_bin.10_k119_8732_50
Type: TF
Location: 61895 - 62629 (+)
Type: TF
Location: 61895 - 62629 (+)
Gene ID: ChuDM_2017_SRR8942429_bin.10_k119_8732_51
Type: TC
Location: 62827 - 64290 (+)
Type: TC
Location: 62827 - 64290 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ChuDM_2017_SRR8942429_bin.10_k119_8732_50 | vegan > omnivore | 1.44501 | 0.02258 |