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Cluster: ChuDM_2017_SRR8942429_bin.10_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ChuDM_2017_SRR8942429_bin.10_k119_24045 ChuDM_2017_SRR8942429_bin.10_k119_24045_83 99372 100496 - GH172
pfam ChuDM_2017_SRR8942429_bin.10_k119_24045 ChuDM_2017_SRR8942429_bin.10_k119_24045_84 100509 100907 - EIIA-man
TC ChuDM_2017_SRR8942429_bin.10_k119_24045 ChuDM_2017_SRR8942429_bin.10_k119_24045_85 100934 101767 - 4.A.6.1.13
TC ChuDM_2017_SRR8942429_bin.10_k119_24045 ChuDM_2017_SRR8942429_bin.10_k119_24045_86 101770 102555 - 4.A.6.1.13
TC ChuDM_2017_SRR8942429_bin.10_k119_24045 ChuDM_2017_SRR8942429_bin.10_k119_24045_87 102565 102987 - 4.A.6.1.18
Gene ID: ChuDM_2017_SRR8942429_bin.10_k119_24045_83
Type: CAZyme
Location: 99372 - 100496 (-)
Gene ID: ChuDM_2017_SRR8942429_bin.10_k119_24045_84
Type: pfam
Location: 100509 - 100907 (-)
Gene ID: ChuDM_2017_SRR8942429_bin.10_k119_24045_85
Type: TC
Location: 100934 - 101767 (-)
Gene ID: ChuDM_2017_SRR8942429_bin.10_k119_24045_86
Type: TC
Location: 101770 - 102555 (-)
Gene ID: ChuDM_2017_SRR8942429_bin.10_k119_24045_87
Type: TC
Location: 102565 - 102987 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
ChuDM_2017_SRR8942429_bin.10_k119_24045_87 vegan > omnivore 1.23586 0.02258

🧭 Explore Read Mapping of CGC

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