Cluster: ChuDM_2017_SRR8942399_bin.18_CGC7
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: ChuDM_2017_SRR8942399_bin.18
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ChuDM_2017_SRR8942399_bin.18_k119_3724 | ChuDM_2017_SRR8942399_bin.18_k119_3724_127 | 166338 | 167744 | + | CE4 |
| STP | ChuDM_2017_SRR8942399_bin.18_k119_3724 | ChuDM_2017_SRR8942399_bin.18_k119_3724_128 | 168119 | 169963 | + | CBS | CBS |
| TC | ChuDM_2017_SRR8942399_bin.18_k119_3724 | ChuDM_2017_SRR8942399_bin.18_k119_3724_129 | 169972 | 171234 | + | 2.A.55.3.6 |
| TC | ChuDM_2017_SRR8942399_bin.18_k119_3724 | ChuDM_2017_SRR8942399_bin.18_k119_3724_130 | 171780 | 173996 | - | 9.B.97.5.1 |
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_3724_127
Type: CAZyme
Location: 166338 - 167744 (+)
Type: CAZyme
Location: 166338 - 167744 (+)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_3724_128
Type: STP
Location: 168119 - 169963 (+)
Type: STP
Location: 168119 - 169963 (+)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_3724_129
Type: TC
Location: 169972 - 171234 (+)
Type: TC
Location: 169972 - 171234 (+)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_3724_130
Type: TC
Location: 171780 - 173996 (-)
Type: TC
Location: 171780 - 173996 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900762405
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.