Cluster: ChuDM_2017_SRR8942399_bin.18_CGC5
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 6
- Substrate:
- Genome ID: ChuDM_2017_SRR8942399_bin.18
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ChuDM_2017_SRR8942399_bin.18_k119_2295 | ChuDM_2017_SRR8942399_bin.18_k119_2295_23 | 31913 | 33916 | - | GT2 |
| CAZyme | ChuDM_2017_SRR8942399_bin.18_k119_2295 | ChuDM_2017_SRR8942399_bin.18_k119_2295_24 | 34133 | 35269 | + | GT2 |
| TC | ChuDM_2017_SRR8942399_bin.18_k119_2295 | ChuDM_2017_SRR8942399_bin.18_k119_2295_25 | 35427 | 36239 | + | 3.A.1.103.4 |
| TC | ChuDM_2017_SRR8942399_bin.18_k119_2295 | ChuDM_2017_SRR8942399_bin.18_k119_2295_26 | 36249 | 37004 | + | 3.A.1.103.1 |
| CAZyme | ChuDM_2017_SRR8942399_bin.18_k119_2295 | ChuDM_2017_SRR8942399_bin.18_k119_2295_27 | 37006 | 38121 | + | GT2 |
| CAZyme | ChuDM_2017_SRR8942399_bin.18_k119_2295 | ChuDM_2017_SRR8942399_bin.18_k119_2295_28 | 38130 | 39188 | + | GT2 |
| CAZyme | ChuDM_2017_SRR8942399_bin.18_k119_2295 | ChuDM_2017_SRR8942399_bin.18_k119_2295_29 | 39210 | 40445 | + | GT4 |
| pfam | ChuDM_2017_SRR8942399_bin.18_k119_2295 | ChuDM_2017_SRR8942399_bin.18_k119_2295_30 | 40502 | 41047 | + | IU_nuc_hydro |
| CAZyme | ChuDM_2017_SRR8942399_bin.18_k119_2295 | ChuDM_2017_SRR8942399_bin.18_k119_2295_31 | 41055 | 42017 | - | GT81 |
| TC | ChuDM_2017_SRR8942399_bin.18_k119_2295 | ChuDM_2017_SRR8942399_bin.18_k119_2295_32 | 42140 | 42982 | + | 3.A.1.103.5 |
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_2295_23
Type: CAZyme
Location: 31913 - 33916 (-)
Type: CAZyme
Location: 31913 - 33916 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_2295_24
Type: CAZyme
Location: 34133 - 35269 (+)
Type: CAZyme
Location: 34133 - 35269 (+)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_2295_25
Type: TC
Location: 35427 - 36239 (+)
Type: TC
Location: 35427 - 36239 (+)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_2295_26
Type: TC
Location: 36249 - 37004 (+)
Type: TC
Location: 36249 - 37004 (+)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_2295_27
Type: CAZyme
Location: 37006 - 38121 (+)
Type: CAZyme
Location: 37006 - 38121 (+)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_2295_28
Type: CAZyme
Location: 38130 - 39188 (+)
Type: CAZyme
Location: 38130 - 39188 (+)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_2295_29
Type: CAZyme
Location: 39210 - 40445 (+)
Type: CAZyme
Location: 39210 - 40445 (+)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_2295_30
Type: pfam
Location: 40502 - 41047 (+)
Type: pfam
Location: 40502 - 41047 (+)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_2295_31
Type: CAZyme
Location: 41055 - 42017 (-)
Type: CAZyme
Location: 41055 - 42017 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_2295_32
Type: TC
Location: 42140 - 42982 (+)
Type: TC
Location: 42140 - 42982 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900762405
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ChuDM_2017_SRR8942399_bin.18_k119_2295_24 | vegetarian > vegan | 2.45493 | 0.01784 |
| ChuDM_2017_SRR8942399_bin.18_k119_2295_26 | vegetarian > vegan | 1.00721 | 0.01784 |
| ChuDM_2017_SRR8942399_bin.18_k119_2295_28 | vegetarian > vegan | 4.08892 | 0.01784 |
| ChuDM_2017_SRR8942399_bin.18_k119_2295_29 | vegetarian > vegan | 3.37443 | 0.01646 |