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Cluster: ChuDM_2017_SRR8942399_bin.18_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ChuDM_2017_SRR8942399_bin.18_k119_1544 ChuDM_2017_SRR8942399_bin.18_k119_1544_223 261331 262038 + 1.C.82.1.1
pfam ChuDM_2017_SRR8942399_bin.18_k119_1544 ChuDM_2017_SRR8942399_bin.18_k119_1544_224 262326 263036 - Metallophos | Metallophos_2
pfam ChuDM_2017_SRR8942399_bin.18_k119_1544 ChuDM_2017_SRR8942399_bin.18_k119_1544_225 263033 264949 - Bmp
TC ChuDM_2017_SRR8942399_bin.18_k119_1544 ChuDM_2017_SRR8942399_bin.18_k119_1544_226 265037 265804 - 1.A.23.4.2
TC ChuDM_2017_SRR8942399_bin.18_k119_1544 ChuDM_2017_SRR8942399_bin.18_k119_1544_227 266139 266933 - 3.A.1.34.1
TC ChuDM_2017_SRR8942399_bin.18_k119_1544 ChuDM_2017_SRR8942399_bin.18_k119_1544_228 266926 267849 - 3.A.1.34.1
TC ChuDM_2017_SRR8942399_bin.18_k119_1544 ChuDM_2017_SRR8942399_bin.18_k119_1544_229 268054 269034 - 3.A.1.34.1
pfam ChuDM_2017_SRR8942399_bin.18_k119_1544 ChuDM_2017_SRR8942399_bin.18_k119_1544_230 269194 269982 - WYL
pfam ChuDM_2017_SRR8942399_bin.18_k119_1544 ChuDM_2017_SRR8942399_bin.18_k119_1544_231 270234 271637 - tRNA-synt_2 | tRNA_anti-codon
TC ChuDM_2017_SRR8942399_bin.18_k119_1544 ChuDM_2017_SRR8942399_bin.18_k119_1544_232 271774 273693 - 9.B.97.5.1
TC ChuDM_2017_SRR8942399_bin.18_k119_1544 ChuDM_2017_SRR8942399_bin.18_k119_1544_233 273928 274491 - 4.A.1.2.6
peptidase ChuDM_2017_SRR8942399_bin.18_k119_1544 ChuDM_2017_SRR8942399_bin.18_k119_1544_234 274738 275637 + S09.UPW
NULL(UNKNOWN) ChuDM_2017_SRR8942399_bin.18_k119_1544 ChuDM_2017_SRR8942399_bin.18_k119_1544_235 275685 276005 + NULL(UNKNOWN)
[View Structural Homologs]
TC ChuDM_2017_SRR8942399_bin.18_k119_1544 ChuDM_2017_SRR8942399_bin.18_k119_1544_236 276127 278487 + 9.A.8.1.6
TC ChuDM_2017_SRR8942399_bin.18_k119_1544 ChuDM_2017_SRR8942399_bin.18_k119_1544_237 278609 279805 + 2.A.1.2.18
CAZyme ChuDM_2017_SRR8942399_bin.18_k119_1544 ChuDM_2017_SRR8942399_bin.18_k119_1544_238 279960 281336 + GH13_20
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_1544_223
Type: TC
Location: 261331 - 262038 (+)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_1544_224
Type: pfam
Location: 262326 - 263036 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_1544_225
Type: pfam
Location: 263033 - 264949 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_1544_226
Type: TC
Location: 265037 - 265804 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_1544_227
Type: TC
Location: 266139 - 266933 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_1544_228
Type: TC
Location: 266926 - 267849 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_1544_229
Type: TC
Location: 268054 - 269034 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_1544_230
Type: pfam
Location: 269194 - 269982 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_1544_231
Type: pfam
Location: 270234 - 271637 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_1544_232
Type: TC
Location: 271774 - 273693 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_1544_233
Type: TC
Location: 273928 - 274491 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_1544_234
Type: peptidase
Location: 274738 - 275637 (+)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_1544_235
Type:
Location: 275685 - 276005 (+)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_1544_236
Type: TC
Location: 276127 - 278487 (+)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_1544_237
Type: TC
Location: 278609 - 279805 (+)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_1544_238
Type: CAZyme
Location: 279960 - 281336 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
ChuDM_2017_SRR8942399_bin.18_k119_1544_232 vegan > omnivore 1.50457 0.00933

🧭 Explore Read Mapping of CGC

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