Cluster: ChuDM_2017_SRR8942399_bin.18_CGC21
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: ChuDM_2017_SRR8942399_bin.18
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ChuDM_2017_SRR8942399_bin.18_k119_17188 | ChuDM_2017_SRR8942399_bin.18_k119_17188_13 | 14102 | 15121 | + | 9.B.146.1.6 |
| pfam | ChuDM_2017_SRR8942399_bin.18_k119_17188 | ChuDM_2017_SRR8942399_bin.18_k119_17188_14 | 15131 | 16537 | + | Mur_ligase_C | Mur_ligase_M |
| TC | ChuDM_2017_SRR8942399_bin.18_k119_17188 | ChuDM_2017_SRR8942399_bin.18_k119_17188_15 | 16574 | 18067 | + | 2.A.103.1.1 |
| CAZyme | ChuDM_2017_SRR8942399_bin.18_k119_17188 | ChuDM_2017_SRR8942399_bin.18_k119_17188_16 | 18057 | 19172 | + | GT28 |
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_17188_13
Type: TC
Location: 14102 - 15121 (+)
Type: TC
Location: 14102 - 15121 (+)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_17188_14
Type: pfam
Location: 15131 - 16537 (+)
Type: pfam
Location: 15131 - 16537 (+)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_17188_15
Type: TC
Location: 16574 - 18067 (+)
Type: TC
Location: 16574 - 18067 (+)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_17188_16
Type: CAZyme
Location: 18057 - 19172 (+)
Type: CAZyme
Location: 18057 - 19172 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900762405
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.