Cluster: ChuDM_2017_SRR8942399_bin.18_CGC18
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 2
- Substrate:
- Genome ID: ChuDM_2017_SRR8942399_bin.18
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ChuDM_2017_SRR8942399_bin.18_k119_13330 | ChuDM_2017_SRR8942399_bin.18_k119_13330_68 | 84792 | 86117 | + | GH4 |
| TC | ChuDM_2017_SRR8942399_bin.18_k119_13330 | ChuDM_2017_SRR8942399_bin.18_k119_13330_69 | 86200 | 87762 | + | 4.A.1.1.3 |
| TF | ChuDM_2017_SRR8942399_bin.18_k119_13330 | ChuDM_2017_SRR8942399_bin.18_k119_13330_70 | 87955 | 88755 | - | HTH_6 |
| TC | ChuDM_2017_SRR8942399_bin.18_k119_13330 | ChuDM_2017_SRR8942399_bin.18_k119_13330_71 | 88834 | 90414 | - | 4.A.1.1.14 |
| CAZyme | ChuDM_2017_SRR8942399_bin.18_k119_13330 | ChuDM_2017_SRR8942399_bin.18_k119_13330_72 | 90439 | 91764 | - | GH4 |
| TC | ChuDM_2017_SRR8942399_bin.18_k119_13330 | ChuDM_2017_SRR8942399_bin.18_k119_13330_73 | 92008 | 93237 | - | 2.A.1.2.25 |
| NULL(UNKNOWN) | ChuDM_2017_SRR8942399_bin.18_k119_13330 | ChuDM_2017_SRR8942399_bin.18_k119_13330_74 | 93498 | 94367 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | ChuDM_2017_SRR8942399_bin.18_k119_13330 | ChuDM_2017_SRR8942399_bin.18_k119_13330_75 | 94447 | 95340 | + | Aldose_epim |
| TC | ChuDM_2017_SRR8942399_bin.18_k119_13330 | ChuDM_2017_SRR8942399_bin.18_k119_13330_76 | 95665 | 96591 | + | 3.A.1.3.20 |
| TC | ChuDM_2017_SRR8942399_bin.18_k119_13330 | ChuDM_2017_SRR8942399_bin.18_k119_13330_77 | 96601 | 97749 | + | 3.A.1.3.20 |
| TC | ChuDM_2017_SRR8942399_bin.18_k119_13330 | ChuDM_2017_SRR8942399_bin.18_k119_13330_78 | 97772 | 98557 | + | 3.A.1.3.20 |
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_13330_68
Type: CAZyme
Location: 84792 - 86117 (+)
Type: CAZyme
Location: 84792 - 86117 (+)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_13330_69
Type: TC
Location: 86200 - 87762 (+)
Type: TC
Location: 86200 - 87762 (+)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_13330_70
Type: TF
Location: 87955 - 88755 (-)
Type: TF
Location: 87955 - 88755 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_13330_71
Type: TC
Location: 88834 - 90414 (-)
Type: TC
Location: 88834 - 90414 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_13330_72
Type: CAZyme
Location: 90439 - 91764 (-)
Type: CAZyme
Location: 90439 - 91764 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_13330_73
Type: TC
Location: 92008 - 93237 (-)
Type: TC
Location: 92008 - 93237 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_13330_74
Type:
Location: 93498 - 94367 (+)
Type:
Location: 93498 - 94367 (+)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_13330_75
Type: pfam
Location: 94447 - 95340 (+)
Type: pfam
Location: 94447 - 95340 (+)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_13330_76
Type: TC
Location: 95665 - 96591 (+)
Type: TC
Location: 95665 - 96591 (+)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_13330_77
Type: TC
Location: 96601 - 97749 (+)
Type: TC
Location: 96601 - 97749 (+)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_13330_78
Type: TC
Location: 97772 - 98557 (+)
Type: TC
Location: 97772 - 98557 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900762405
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.