Cluster: ChuDM_2017_SRR8942399_bin.18_CGC17
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: ChuDM_2017_SRR8942399_bin.18
- CGC Family ID: CGCFAM_00018
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ChuDM_2017_SRR8942399_bin.18_k119_10427 | ChuDM_2017_SRR8942399_bin.18_k119_10427_11 | 11541 | 12848 | - | GT4 |
| pfam | ChuDM_2017_SRR8942399_bin.18_k119_10427 | ChuDM_2017_SRR8942399_bin.18_k119_10427_12 | 12854 | 13768 | - | ATPgrasp_TupA |
| TC | ChuDM_2017_SRR8942399_bin.18_k119_10427 | ChuDM_2017_SRR8942399_bin.18_k119_10427_13 | 13819 | 15255 | - | 2.A.66.2.16 |
| pfam | ChuDM_2017_SRR8942399_bin.18_k119_10427 | ChuDM_2017_SRR8942399_bin.18_k119_10427_14 | 15240 | 16760 | - | O-ag_pol_Wzy |
| CAZyme | ChuDM_2017_SRR8942399_bin.18_k119_10427 | ChuDM_2017_SRR8942399_bin.18_k119_10427_15 | 16760 | 17962 | - | GT4 |
| pfam | ChuDM_2017_SRR8942399_bin.18_k119_10427 | ChuDM_2017_SRR8942399_bin.18_k119_10427_16 | 17962 | 19092 | - | Epimerase_2 |
| pfam | ChuDM_2017_SRR8942399_bin.18_k119_10427 | ChuDM_2017_SRR8942399_bin.18_k119_10427_17 | 19095 | 19949 | - | Epimerase | RmlD_sub_bind |
| TC | ChuDM_2017_SRR8942399_bin.18_k119_10427 | ChuDM_2017_SRR8942399_bin.18_k119_10427_18 | 19952 | 21010 | - | 9.B.18.2.1 |
| CAZyme | ChuDM_2017_SRR8942399_bin.18_k119_10427 | ChuDM_2017_SRR8942399_bin.18_k119_10427_19 | 21011 | 22210 | - | GT4 |
| TC | ChuDM_2017_SRR8942399_bin.18_k119_10427 | ChuDM_2017_SRR8942399_bin.18_k119_10427_20 | 22219 | 22863 | - | 9.B.18.1.2 |
| TC | ChuDM_2017_SRR8942399_bin.18_k119_10427 | ChuDM_2017_SRR8942399_bin.18_k119_10427_21 | 22905 | 23618 | - | 9.B.18.1.2 |
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_10427_11
Type: CAZyme
Location: 11541 - 12848 (-)
Type: CAZyme
Location: 11541 - 12848 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_10427_12
Type: pfam
Location: 12854 - 13768 (-)
Type: pfam
Location: 12854 - 13768 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_10427_13
Type: TC
Location: 13819 - 15255 (-)
Type: TC
Location: 13819 - 15255 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_10427_14
Type: pfam
Location: 15240 - 16760 (-)
Type: pfam
Location: 15240 - 16760 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_10427_15
Type: CAZyme
Location: 16760 - 17962 (-)
Type: CAZyme
Location: 16760 - 17962 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_10427_16
Type: pfam
Location: 17962 - 19092 (-)
Type: pfam
Location: 17962 - 19092 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_10427_17
Type: pfam
Location: 19095 - 19949 (-)
Type: pfam
Location: 19095 - 19949 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_10427_18
Type: TC
Location: 19952 - 21010 (-)
Type: TC
Location: 19952 - 21010 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_10427_19
Type: CAZyme
Location: 21011 - 22210 (-)
Type: CAZyme
Location: 21011 - 22210 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_10427_20
Type: TC
Location: 22219 - 22863 (-)
Type: TC
Location: 22219 - 22863 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_10427_21
Type: TC
Location: 22905 - 23618 (-)
Type: TC
Location: 22905 - 23618 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900762405
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.