Cluster: ChuDM_2017_SRR8942399_bin.18_CGC15
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: ChuDM_2017_SRR8942399_bin.18
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ChuDM_2017_SRR8942399_bin.18_k119_6897 | ChuDM_2017_SRR8942399_bin.18_k119_6897_59 | 65332 | 66258 | - | CE7 |
| TC | ChuDM_2017_SRR8942399_bin.18_k119_6897 | ChuDM_2017_SRR8942399_bin.18_k119_6897_60 | 66390 | 67217 | - | 3.A.1.5.27 |
| TC | ChuDM_2017_SRR8942399_bin.18_k119_6897 | ChuDM_2017_SRR8942399_bin.18_k119_6897_61 | 67218 | 69233 | - | 3.A.1.5.25 |
| TC | ChuDM_2017_SRR8942399_bin.18_k119_6897 | ChuDM_2017_SRR8942399_bin.18_k119_6897_62 | 69237 | 70193 | - | 3.A.1.5.38 |
| TC | ChuDM_2017_SRR8942399_bin.18_k119_6897 | ChuDM_2017_SRR8942399_bin.18_k119_6897_63 | 70349 | 71962 | - | 3.A.1.5.27 |
| pfam | ChuDM_2017_SRR8942399_bin.18_k119_6897 | ChuDM_2017_SRR8942399_bin.18_k119_6897_64 | 72328 | 74268 | - | GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH |
| TC | ChuDM_2017_SRR8942399_bin.18_k119_6897 | ChuDM_2017_SRR8942399_bin.18_k119_6897_65 | 74275 | 76578 | - | 2.A.66.4.4 |
| pfam | ChuDM_2017_SRR8942399_bin.18_k119_6897 | ChuDM_2017_SRR8942399_bin.18_k119_6897_66 | 76582 | 77082 | - | tRNA_edit |
| pfam | ChuDM_2017_SRR8942399_bin.18_k119_6897 | ChuDM_2017_SRR8942399_bin.18_k119_6897_67 | 77216 | 80095 | - | UvrA_DNA-bind | UvrA_inter |
| TC | ChuDM_2017_SRR8942399_bin.18_k119_6897 | ChuDM_2017_SRR8942399_bin.18_k119_6897_68 | 80355 | 81185 | + | 3.A.1.132.3 |
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_6897_59
Type: CAZyme
Location: 65332 - 66258 (-)
Type: CAZyme
Location: 65332 - 66258 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_6897_60
Type: TC
Location: 66390 - 67217 (-)
Type: TC
Location: 66390 - 67217 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_6897_61
Type: TC
Location: 67218 - 69233 (-)
Type: TC
Location: 67218 - 69233 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_6897_62
Type: TC
Location: 69237 - 70193 (-)
Type: TC
Location: 69237 - 70193 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_6897_63
Type: TC
Location: 70349 - 71962 (-)
Type: TC
Location: 70349 - 71962 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_6897_64
Type: pfam
Location: 72328 - 74268 (-)
Type: pfam
Location: 72328 - 74268 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_6897_65
Type: TC
Location: 74275 - 76578 (-)
Type: TC
Location: 74275 - 76578 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_6897_66
Type: pfam
Location: 76582 - 77082 (-)
Type: pfam
Location: 76582 - 77082 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_6897_67
Type: pfam
Location: 77216 - 80095 (-)
Type: pfam
Location: 77216 - 80095 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_6897_68
Type: TC
Location: 80355 - 81185 (+)
Type: TC
Location: 80355 - 81185 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900762405
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.