Cluster: ChuDM_2017_SRR8942399_bin.18_CGC14
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ChuDM_2017_SRR8942399_bin.18
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ChuDM_2017_SRR8942399_bin.18_k119_6897 | ChuDM_2017_SRR8942399_bin.18_k119_6897_40 | 41658 | 43391 | - | GH13_30 |
| STP | ChuDM_2017_SRR8942399_bin.18_k119_6897 | ChuDM_2017_SRR8942399_bin.18_k119_6897_41 | 44142 | 44882 | - | STAS |
| STP | ChuDM_2017_SRR8942399_bin.18_k119_6897 | ChuDM_2017_SRR8942399_bin.18_k119_6897_42 | 44964 | 47309 | - | GAF | SpoIIE |
| TC | ChuDM_2017_SRR8942399_bin.18_k119_6897 | ChuDM_2017_SRR8942399_bin.18_k119_6897_43 | 48055 | 49083 | - | 3.A.1.5.36 |
| TC | ChuDM_2017_SRR8942399_bin.18_k119_6897 | ChuDM_2017_SRR8942399_bin.18_k119_6897_44 | 49083 | 50174 | - | 3.A.1.5.34 |
| TC | ChuDM_2017_SRR8942399_bin.18_k119_6897 | ChuDM_2017_SRR8942399_bin.18_k119_6897_45 | 50177 | 51112 | - | 3.A.1.5.11 |
| TC | ChuDM_2017_SRR8942399_bin.18_k119_6897 | ChuDM_2017_SRR8942399_bin.18_k119_6897_46 | 51127 | 52164 | - | 3.A.1.5.37 |
| TC | ChuDM_2017_SRR8942399_bin.18_k119_6897 | ChuDM_2017_SRR8942399_bin.18_k119_6897_47 | 52320 | 53996 | - | 3.A.1.5.35 |
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_6897_40
Type: CAZyme
Location: 41658 - 43391 (-)
Type: CAZyme
Location: 41658 - 43391 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_6897_41
Type: STP
Location: 44142 - 44882 (-)
Type: STP
Location: 44142 - 44882 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_6897_42
Type: STP
Location: 44964 - 47309 (-)
Type: STP
Location: 44964 - 47309 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_6897_43
Type: TC
Location: 48055 - 49083 (-)
Type: TC
Location: 48055 - 49083 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_6897_44
Type: TC
Location: 49083 - 50174 (-)
Type: TC
Location: 49083 - 50174 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_6897_45
Type: TC
Location: 50177 - 51112 (-)
Type: TC
Location: 50177 - 51112 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_6897_46
Type: TC
Location: 51127 - 52164 (-)
Type: TC
Location: 51127 - 52164 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_6897_47
Type: TC
Location: 52320 - 53996 (-)
Type: TC
Location: 52320 - 53996 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900762405
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.