Cluster: ChuDM_2017_SRR8942399_bin.18_CGC13
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: ChuDM_2017_SRR8942399_bin.18
- CGC Family ID: CGCFAM_00182
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ChuDM_2017_SRR8942399_bin.18_k119_6480 | ChuDM_2017_SRR8942399_bin.18_k119_6480_19 | 19158 | 20375 | - | GT4 |
| pfam | ChuDM_2017_SRR8942399_bin.18_k119_6480 | ChuDM_2017_SRR8942399_bin.18_k119_6480_20 | 20390 | 21154 | - | BcrAD_BadFG |
| pfam | ChuDM_2017_SRR8942399_bin.18_k119_6480 | ChuDM_2017_SRR8942399_bin.18_k119_6480_21 | 21310 | 22473 | - | HGD-D |
| TC | ChuDM_2017_SRR8942399_bin.18_k119_6480 | ChuDM_2017_SRR8942399_bin.18_k119_6480_22 | 22550 | 23335 | - | 3.A.1.5.36 |
| TC | ChuDM_2017_SRR8942399_bin.18_k119_6480 | ChuDM_2017_SRR8942399_bin.18_k119_6480_23 | 23325 | 24320 | - | 3.A.1.5.37 |
| TC | ChuDM_2017_SRR8942399_bin.18_k119_6480 | ChuDM_2017_SRR8942399_bin.18_k119_6480_24 | 24324 | 25151 | - | 3.A.1.5.39 |
| TC | ChuDM_2017_SRR8942399_bin.18_k119_6480 | ChuDM_2017_SRR8942399_bin.18_k119_6480_25 | 25151 | 26104 | - | 3.A.1.5.39 |
| TC | ChuDM_2017_SRR8942399_bin.18_k119_6480 | ChuDM_2017_SRR8942399_bin.18_k119_6480_26 | 26193 | 27803 | - | 3.A.1.5.11 |
| pfam | ChuDM_2017_SRR8942399_bin.18_k119_6480 | ChuDM_2017_SRR8942399_bin.18_k119_6480_27 | 27988 | 29271 | - | HGD-D |
| TC | ChuDM_2017_SRR8942399_bin.18_k119_6480 | ChuDM_2017_SRR8942399_bin.18_k119_6480_28 | 29702 | 30772 | - | 3.A.1.1.3 |
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_6480_19
Type: CAZyme
Location: 19158 - 20375 (-)
Type: CAZyme
Location: 19158 - 20375 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_6480_20
Type: pfam
Location: 20390 - 21154 (-)
Type: pfam
Location: 20390 - 21154 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_6480_21
Type: pfam
Location: 21310 - 22473 (-)
Type: pfam
Location: 21310 - 22473 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_6480_22
Type: TC
Location: 22550 - 23335 (-)
Type: TC
Location: 22550 - 23335 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_6480_23
Type: TC
Location: 23325 - 24320 (-)
Type: TC
Location: 23325 - 24320 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_6480_24
Type: TC
Location: 24324 - 25151 (-)
Type: TC
Location: 24324 - 25151 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_6480_25
Type: TC
Location: 25151 - 26104 (-)
Type: TC
Location: 25151 - 26104 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_6480_26
Type: TC
Location: 26193 - 27803 (-)
Type: TC
Location: 26193 - 27803 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_6480_27
Type: pfam
Location: 27988 - 29271 (-)
Type: pfam
Location: 27988 - 29271 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_6480_28
Type: TC
Location: 29702 - 30772 (-)
Type: TC
Location: 29702 - 30772 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900762405
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ChuDM_2017_SRR8942399_bin.18_k119_6480_19 | vegan > omnivore | 1.65929 | 0.00933 |
| ChuDM_2017_SRR8942399_bin.18_k119_6480_22 | vegan > omnivore | 3.14222 | 0.00933 |
| ChuDM_2017_SRR8942399_bin.18_k119_6480_23 | vegan > omnivore | 1.58696 | 0.00933 |
| ChuDM_2017_SRR8942399_bin.18_k119_6480_24 | vegan > omnivore | 3.39955 | 0.00933 |
| ChuDM_2017_SRR8942399_bin.18_k119_6480_25 | vegan > omnivore | 3.11160 | 0.00933 |
| ChuDM_2017_SRR8942399_bin.18_k119_6480_26 | vegan > omnivore | 3.59009 | 0.00933 |