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Cluster: ChuDM_2017_SRR8942399_bin.18_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ChuDM_2017_SRR8942399_bin.18_k119_1544 ChuDM_2017_SRR8942399_bin.18_k119_1544_59 71806 73293 + 4.A.1.1.7
TF ChuDM_2017_SRR8942399_bin.18_k119_1544 ChuDM_2017_SRR8942399_bin.18_k119_1544_60 73526 74257 + GntR
CAZyme ChuDM_2017_SRR8942399_bin.18_k119_1544 ChuDM_2017_SRR8942399_bin.18_k119_1544_61 74401 75570 + CE9
pfam ChuDM_2017_SRR8942399_bin.18_k119_1544 ChuDM_2017_SRR8942399_bin.18_k119_1544_62 75645 76076 + DUF386
TC ChuDM_2017_SRR8942399_bin.18_k119_1544 ChuDM_2017_SRR8942399_bin.18_k119_1544_63 76556 77035 + 4.A.6.1.4
sulfatase ChuDM_2017_SRR8942399_bin.18_k119_1544 ChuDM_2017_SRR8942399_bin.18_k119_1544_64 77120 78172 - S1_4
TC ChuDM_2017_SRR8942399_bin.18_k119_1544 ChuDM_2017_SRR8942399_bin.18_k119_1544_65 78353 79876 - 4.A.5.1.6
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_1544_59
Type: TC
Location: 71806 - 73293 (+)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_1544_60
Type: TF
Location: 73526 - 74257 (+)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_1544_61
Type: CAZyme
Location: 74401 - 75570 (+)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_1544_62
Type: pfam
Location: 75645 - 76076 (+)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_1544_63
Type: TC
Location: 76556 - 77035 (+)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_1544_64
Type: sulfatase
Location: 77120 - 78172 (-)
Gene ID: ChuDM_2017_SRR8942399_bin.18_k119_1544_65
Type: TC
Location: 78353 - 79876 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
ChuDM_2017_SRR8942399_bin.18_k119_1544_60 vegetarian > vegan 3.27128 0.01436

🧭 Explore Read Mapping of CGC

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