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Cluster: ChuDM_2017_SRR8942396_bin.6_CGC53

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ChuDM_2017_SRR8942396_bin.6_k119_36903 ChuDM_2017_SRR8942396_bin.6_k119_36903_27 30654 31826 - GT2
pfam ChuDM_2017_SRR8942396_bin.6_k119_36903 ChuDM_2017_SRR8942396_bin.6_k119_36903_28 31916 33073 - Orn_DAP_Arg_deC | Ala_racemase_N | Orn_Arg_deC_N
pfam ChuDM_2017_SRR8942396_bin.6_k119_36903 ChuDM_2017_SRR8942396_bin.6_k119_36903_29 33094 34404 - AA_kinase | ACT_9
TC ChuDM_2017_SRR8942396_bin.6_k119_36903 ChuDM_2017_SRR8942396_bin.6_k119_36903_30 34626 36242 + 3.A.1.121.4
pfam ChuDM_2017_SRR8942396_bin.6_k119_36903 ChuDM_2017_SRR8942396_bin.6_k119_36903_31 36574 37080 + Acetyltransf_1 | Acetyltransf_3 | Acetyltransf_4 | Acetyltransf_8
pfam ChuDM_2017_SRR8942396_bin.6_k119_36903 ChuDM_2017_SRR8942396_bin.6_k119_36903_32 37108 37560 - Acetyltransf_1 | Acetyltransf_7 | Acetyltransf_10
TC ChuDM_2017_SRR8942396_bin.6_k119_36903 ChuDM_2017_SRR8942396_bin.6_k119_36903_33 37674 40214 - 3.A.9.1.2
TC ChuDM_2017_SRR8942396_bin.6_k119_36903 ChuDM_2017_SRR8942396_bin.6_k119_36903_34 40563 42110 + 2.A.17.1.2
TC ChuDM_2017_SRR8942396_bin.6_k119_36903 ChuDM_2017_SRR8942396_bin.6_k119_36903_35 42145 42471 + 2.A.17.1.7
TC ChuDM_2017_SRR8942396_bin.6_k119_36903 ChuDM_2017_SRR8942396_bin.6_k119_36903_36 42541 43545 + 2.A.17.1.6
pfam ChuDM_2017_SRR8942396_bin.6_k119_36903 ChuDM_2017_SRR8942396_bin.6_k119_36903_37 43667 44152 + DUF454
pfam ChuDM_2017_SRR8942396_bin.6_k119_36903 ChuDM_2017_SRR8942396_bin.6_k119_36903_38 44280 44579 + DUF3467
TC ChuDM_2017_SRR8942396_bin.6_k119_36903 ChuDM_2017_SRR8942396_bin.6_k119_36903_39 44625 45731 + 3.D.2.4.1
TC ChuDM_2017_SRR8942396_bin.6_k119_36903 ChuDM_2017_SRR8942396_bin.6_k119_36903_40 45894 47444 + 3.D.4.3.2
Gene ID: ChuDM_2017_SRR8942396_bin.6_k119_36903_27
Type: CAZyme
Location: 30654 - 31826 (-)
Gene ID: ChuDM_2017_SRR8942396_bin.6_k119_36903_28
Type: pfam
Location: 31916 - 33073 (-)
Gene ID: ChuDM_2017_SRR8942396_bin.6_k119_36903_29
Type: pfam
Location: 33094 - 34404 (-)
Gene ID: ChuDM_2017_SRR8942396_bin.6_k119_36903_30
Type: TC
Location: 34626 - 36242 (+)
Gene ID: ChuDM_2017_SRR8942396_bin.6_k119_36903_31
Type: pfam
Location: 36574 - 37080 (+)
Gene ID: ChuDM_2017_SRR8942396_bin.6_k119_36903_32
Type: pfam
Location: 37108 - 37560 (-)
Gene ID: ChuDM_2017_SRR8942396_bin.6_k119_36903_33
Type: TC
Location: 37674 - 40214 (-)
Gene ID: ChuDM_2017_SRR8942396_bin.6_k119_36903_34
Type: TC
Location: 40563 - 42110 (+)
Gene ID: ChuDM_2017_SRR8942396_bin.6_k119_36903_35
Type: TC
Location: 42145 - 42471 (+)
Gene ID: ChuDM_2017_SRR8942396_bin.6_k119_36903_36
Type: TC
Location: 42541 - 43545 (+)
Gene ID: ChuDM_2017_SRR8942396_bin.6_k119_36903_37
Type: pfam
Location: 43667 - 44152 (+)
Gene ID: ChuDM_2017_SRR8942396_bin.6_k119_36903_38
Type: pfam
Location: 44280 - 44579 (+)
Gene ID: ChuDM_2017_SRR8942396_bin.6_k119_36903_39
Type: TC
Location: 44625 - 45731 (+)
Gene ID: ChuDM_2017_SRR8942396_bin.6_k119_36903_40
Type: TC
Location: 45894 - 47444 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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