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Cluster: ChuDM_2017_SRR8942396_bin.10_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ChuDM_2017_SRR8942396_bin.10_k119_5785 ChuDM_2017_SRR8942396_bin.10_k119_5785_28 25205 26230 - 3.A.1.2.13
TC ChuDM_2017_SRR8942396_bin.10_k119_5785 ChuDM_2017_SRR8942396_bin.10_k119_5785_29 26220 27731 - 3.A.1.2.20
pfam ChuDM_2017_SRR8942396_bin.10_k119_5785 ChuDM_2017_SRR8942396_bin.10_k119_5785_30 27796 28848 - Peripla_BP_4
pfam ChuDM_2017_SRR8942396_bin.10_k119_5785 ChuDM_2017_SRR8942396_bin.10_k119_5785_31 28909 29823 - AP_endonuc_2
CAZyme ChuDM_2017_SRR8942396_bin.10_k119_5785 ChuDM_2017_SRR8942396_bin.10_k119_5785_32 29820 30869 - GH179
Gene ID: ChuDM_2017_SRR8942396_bin.10_k119_5785_28
Type: TC
Location: 25205 - 26230 (-)
Gene ID: ChuDM_2017_SRR8942396_bin.10_k119_5785_29
Type: TC
Location: 26220 - 27731 (-)
Gene ID: ChuDM_2017_SRR8942396_bin.10_k119_5785_30
Type: pfam
Location: 27796 - 28848 (-)
Gene ID: ChuDM_2017_SRR8942396_bin.10_k119_5785_31
Type: pfam
Location: 28909 - 29823 (-)
Gene ID: ChuDM_2017_SRR8942396_bin.10_k119_5785_32
Type: CAZyme
Location: 29820 - 30869 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
ChuDM_2017_SRR8942396_bin.10_k119_5785_30 vegan > omnivore 1.16427 0.03476

🧭 Explore Read Mapping of CGC

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