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Cluster: ChuDM_2017_SRR8942396_bin.10_CGC33

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ChuDM_2017_SRR8942396_bin.10_k119_29566 ChuDM_2017_SRR8942396_bin.10_k119_29566_204 218560 219417 - 3.A.1.1.47
TC ChuDM_2017_SRR8942396_bin.10_k119_29566 ChuDM_2017_SRR8942396_bin.10_k119_29566_205 219414 220346 - 3.A.1.1.47
TC ChuDM_2017_SRR8942396_bin.10_k119_29566 ChuDM_2017_SRR8942396_bin.10_k119_29566_206 220432 221712 - 3.A.1.1.47
TC ChuDM_2017_SRR8942396_bin.10_k119_29566 ChuDM_2017_SRR8942396_bin.10_k119_29566_207 221865 223133 - 3.A.1.1.47
TF ChuDM_2017_SRR8942396_bin.10_k119_29566 ChuDM_2017_SRR8942396_bin.10_k119_29566_208 223120 223884 - HTH_AraC | HTH_AraC
STP ChuDM_2017_SRR8942396_bin.10_k119_29566 ChuDM_2017_SRR8942396_bin.10_k119_29566_209 223872 225617 - HATPase_c | dCache_1
CAZyme ChuDM_2017_SRR8942396_bin.10_k119_29566 ChuDM_2017_SRR8942396_bin.10_k119_29566_210 225643 227289 - GH123
TC ChuDM_2017_SRR8942396_bin.10_k119_29566 ChuDM_2017_SRR8942396_bin.10_k119_29566_211 227361 228716 - 3.A.1.1.11
TC ChuDM_2017_SRR8942396_bin.10_k119_29566 ChuDM_2017_SRR8942396_bin.10_k119_29566_212 228730 229638 - 3.A.1.1.30
STP ChuDM_2017_SRR8942396_bin.10_k119_29566 ChuDM_2017_SRR8942396_bin.10_k119_29566_213 229894 231213 + SBP_bac_1
TC ChuDM_2017_SRR8942396_bin.10_k119_29566 ChuDM_2017_SRR8942396_bin.10_k119_29566_214 231361 233307 + 8.A.59.2.1
TF ChuDM_2017_SRR8942396_bin.10_k119_29566 ChuDM_2017_SRR8942396_bin.10_k119_29566_215 233304 234551 + HTH_AraC | HTH_AraC
pfam ChuDM_2017_SRR8942396_bin.10_k119_29566 ChuDM_2017_SRR8942396_bin.10_k119_29566_216 234560 235102 - Lysine_decarbox | LDcluster4
TC ChuDM_2017_SRR8942396_bin.10_k119_29566 ChuDM_2017_SRR8942396_bin.10_k119_29566_217 235233 236363 - 9.B.141.1.1
pfam ChuDM_2017_SRR8942396_bin.10_k119_29566 ChuDM_2017_SRR8942396_bin.10_k119_29566_218 236367 237926 - Alk_phosphatase
pfam ChuDM_2017_SRR8942396_bin.10_k119_29566 ChuDM_2017_SRR8942396_bin.10_k119_29566_219 238075 240732 - FtsX | FtsX
TC ChuDM_2017_SRR8942396_bin.10_k119_29566 ChuDM_2017_SRR8942396_bin.10_k119_29566_220 240722 241405 - 3.A.1.125.3
Gene ID: ChuDM_2017_SRR8942396_bin.10_k119_29566_204
Type: TC
Location: 218560 - 219417 (-)
Gene ID: ChuDM_2017_SRR8942396_bin.10_k119_29566_205
Type: TC
Location: 219414 - 220346 (-)
Gene ID: ChuDM_2017_SRR8942396_bin.10_k119_29566_206
Type: TC
Location: 220432 - 221712 (-)
Gene ID: ChuDM_2017_SRR8942396_bin.10_k119_29566_207
Type: TC
Location: 221865 - 223133 (-)
Gene ID: ChuDM_2017_SRR8942396_bin.10_k119_29566_208
Type: TF
Location: 223120 - 223884 (-)
Gene ID: ChuDM_2017_SRR8942396_bin.10_k119_29566_209
Type: STP
Location: 223872 - 225617 (-)
Gene ID: ChuDM_2017_SRR8942396_bin.10_k119_29566_210
Type: CAZyme
Location: 225643 - 227289 (-)
Gene ID: ChuDM_2017_SRR8942396_bin.10_k119_29566_211
Type: TC
Location: 227361 - 228716 (-)
Gene ID: ChuDM_2017_SRR8942396_bin.10_k119_29566_212
Type: TC
Location: 228730 - 229638 (-)
Gene ID: ChuDM_2017_SRR8942396_bin.10_k119_29566_213
Type: STP
Location: 229894 - 231213 (+)
Gene ID: ChuDM_2017_SRR8942396_bin.10_k119_29566_214
Type: TC
Location: 231361 - 233307 (+)
Gene ID: ChuDM_2017_SRR8942396_bin.10_k119_29566_215
Type: TF
Location: 233304 - 234551 (+)
Gene ID: ChuDM_2017_SRR8942396_bin.10_k119_29566_216
Type: pfam
Location: 234560 - 235102 (-)
Gene ID: ChuDM_2017_SRR8942396_bin.10_k119_29566_217
Type: TC
Location: 235233 - 236363 (-)
Gene ID: ChuDM_2017_SRR8942396_bin.10_k119_29566_218
Type: pfam
Location: 236367 - 237926 (-)
Gene ID: ChuDM_2017_SRR8942396_bin.10_k119_29566_219
Type: pfam
Location: 238075 - 240732 (-)
Gene ID: ChuDM_2017_SRR8942396_bin.10_k119_29566_220
Type: TC
Location: 240722 - 241405 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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