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Cluster: ChuDM_2017_SRR8942396_bin.10_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ChuDM_2017_SRR8942396_bin.10_k119_14506 ChuDM_2017_SRR8942396_bin.10_k119_14506_43 43519 44688 - GH109
STP ChuDM_2017_SRR8942396_bin.10_k119_14506 ChuDM_2017_SRR8942396_bin.10_k119_14506_44 45018 46286 + SBP_bac_1
TC ChuDM_2017_SRR8942396_bin.10_k119_14506 ChuDM_2017_SRR8942396_bin.10_k119_14506_45 46375 47283 + 3.A.1.1.25
TC ChuDM_2017_SRR8942396_bin.10_k119_14506 ChuDM_2017_SRR8942396_bin.10_k119_14506_46 47303 48142 + 3.A.1.1.44
TC ChuDM_2017_SRR8942396_bin.10_k119_14506 ChuDM_2017_SRR8942396_bin.10_k119_14506_47 48178 49998 + 8.A.59.2.1
TF ChuDM_2017_SRR8942396_bin.10_k119_14506 ChuDM_2017_SRR8942396_bin.10_k119_14506_48 50053 51537 + HTH_AraC
TC ChuDM_2017_SRR8942396_bin.10_k119_14506 ChuDM_2017_SRR8942396_bin.10_k119_14506_49 51634 52008 + 3.A.1.25.5
Gene ID: ChuDM_2017_SRR8942396_bin.10_k119_14506_43
Type: CAZyme
Location: 43519 - 44688 (-)
Gene ID: ChuDM_2017_SRR8942396_bin.10_k119_14506_44
Type: STP
Location: 45018 - 46286 (+)
Gene ID: ChuDM_2017_SRR8942396_bin.10_k119_14506_45
Type: TC
Location: 46375 - 47283 (+)
Gene ID: ChuDM_2017_SRR8942396_bin.10_k119_14506_46
Type: TC
Location: 47303 - 48142 (+)
Gene ID: ChuDM_2017_SRR8942396_bin.10_k119_14506_47
Type: TC
Location: 48178 - 49998 (+)
Gene ID: ChuDM_2017_SRR8942396_bin.10_k119_14506_48
Type: TF
Location: 50053 - 51537 (+)
Gene ID: ChuDM_2017_SRR8942396_bin.10_k119_14506_49
Type: TC
Location: 51634 - 52008 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
ChuDM_2017_SRR8942396_bin.10_k119_14506_49 vegan > omnivore 1.72745 0.03476

🧭 Explore Read Mapping of CGC

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