Cluster: ChuDM_2017_SRR8942395_bin.4_CGC19
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: ChuDM_2017_SRR8942395_bin.4
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ChuDM_2017_SRR8942395_bin.4_k119_34264 | ChuDM_2017_SRR8942395_bin.4_k119_34264_4 | 4429 | 6879 | - | 4.A.1.1.8 |
| TF | ChuDM_2017_SRR8942395_bin.4_k119_34264 | ChuDM_2017_SRR8942395_bin.4_k119_34264_5 | 7109 | 7828 | + | GntR |
| TC | ChuDM_2017_SRR8942395_bin.4_k119_34264 | ChuDM_2017_SRR8942395_bin.4_k119_34264_6 | 8135 | 9451 | + | 3.A.1.1.45 |
| TC | ChuDM_2017_SRR8942395_bin.4_k119_34264 | ChuDM_2017_SRR8942395_bin.4_k119_34264_7 | 9539 | 10393 | + | 3.A.1.1.45 |
| TC | ChuDM_2017_SRR8942395_bin.4_k119_34264 | ChuDM_2017_SRR8942395_bin.4_k119_34264_8 | 10393 | 11232 | + | 3.A.1.1.45 |
| TC | ChuDM_2017_SRR8942395_bin.4_k119_34264 | ChuDM_2017_SRR8942395_bin.4_k119_34264_9 | 11301 | 12500 | + | 3.A.1.1.22 |
| CAZyme | ChuDM_2017_SRR8942395_bin.4_k119_34264 | ChuDM_2017_SRR8942395_bin.4_k119_34264_10 | 12958 | 15225 | - | GT35 |
| CAZyme | ChuDM_2017_SRR8942395_bin.4_k119_34264 | ChuDM_2017_SRR8942395_bin.4_k119_34264_11 | 15354 | 16859 | - | GH77 |
Gene ID: ChuDM_2017_SRR8942395_bin.4_k119_34264_4
Type: TC
Location: 4429 - 6879 (-)
Type: TC
Location: 4429 - 6879 (-)
Gene ID: ChuDM_2017_SRR8942395_bin.4_k119_34264_5
Type: TF
Location: 7109 - 7828 (+)
Type: TF
Location: 7109 - 7828 (+)
Gene ID: ChuDM_2017_SRR8942395_bin.4_k119_34264_6
Type: TC
Location: 8135 - 9451 (+)
Type: TC
Location: 8135 - 9451 (+)
Gene ID: ChuDM_2017_SRR8942395_bin.4_k119_34264_7
Type: TC
Location: 9539 - 10393 (+)
Type: TC
Location: 9539 - 10393 (+)
Gene ID: ChuDM_2017_SRR8942395_bin.4_k119_34264_8
Type: TC
Location: 10393 - 11232 (+)
Type: TC
Location: 10393 - 11232 (+)
Gene ID: ChuDM_2017_SRR8942395_bin.4_k119_34264_9
Type: TC
Location: 11301 - 12500 (+)
Type: TC
Location: 11301 - 12500 (+)
Gene ID: ChuDM_2017_SRR8942395_bin.4_k119_34264_10
Type: CAZyme
Location: 12958 - 15225 (-)
Type: CAZyme
Location: 12958 - 15225 (-)
Gene ID: ChuDM_2017_SRR8942395_bin.4_k119_34264_11
Type: CAZyme
Location: 15354 - 16859 (-)
Type: CAZyme
Location: 15354 - 16859 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.