Cluster: ChuDM_2017_SRR8942395_bin.4_CGC16
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: ChuDM_2017_SRR8942395_bin.4
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ChuDM_2017_SRR8942395_bin.4_k119_28890 | ChuDM_2017_SRR8942395_bin.4_k119_28890_4 | 2872 | 3354 | - | 4.A.6.1.5 |
| pfam | ChuDM_2017_SRR8942395_bin.4_k119_28890 | ChuDM_2017_SRR8942395_bin.4_k119_28890_5 | 3850 | 4323 | - | DUF386 |
| CAZyme | ChuDM_2017_SRR8942395_bin.4_k119_28890 | ChuDM_2017_SRR8942395_bin.4_k119_28890_6 | 4356 | 5525 | - | CE9 |
| TF | ChuDM_2017_SRR8942395_bin.4_k119_28890 | ChuDM_2017_SRR8942395_bin.4_k119_28890_7 | 5669 | 6400 | - | GntR |
| TC | ChuDM_2017_SRR8942395_bin.4_k119_28890 | ChuDM_2017_SRR8942395_bin.4_k119_28890_8 | 6633 | 8120 | - | 4.A.1.1.7 |
Gene ID: ChuDM_2017_SRR8942395_bin.4_k119_28890_4
Type: TC
Location: 2872 - 3354 (-)
Type: TC
Location: 2872 - 3354 (-)
Gene ID: ChuDM_2017_SRR8942395_bin.4_k119_28890_5
Type: pfam
Location: 3850 - 4323 (-)
Type: pfam
Location: 3850 - 4323 (-)
Gene ID: ChuDM_2017_SRR8942395_bin.4_k119_28890_6
Type: CAZyme
Location: 4356 - 5525 (-)
Type: CAZyme
Location: 4356 - 5525 (-)
Gene ID: ChuDM_2017_SRR8942395_bin.4_k119_28890_7
Type: TF
Location: 5669 - 6400 (-)
Type: TF
Location: 5669 - 6400 (-)
Gene ID: ChuDM_2017_SRR8942395_bin.4_k119_28890_8
Type: TC
Location: 6633 - 8120 (-)
Type: TC
Location: 6633 - 8120 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ChuDM_2017_SRR8942395_bin.4_k119_28890_7 | vegetarian > vegan | 3.12704 | 0.02517 |