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Cluster: ChuDM_2017_SRR8942395_bin.4_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ChuDM_2017_SRR8942395_bin.4_k119_19830 ChuDM_2017_SRR8942395_bin.4_k119_19830_23 25084 25422 - 4.A.3.1.2
TF ChuDM_2017_SRR8942395_bin.4_k119_19830 ChuDM_2017_SRR8942395_bin.4_k119_19830_24 25637 26641 - LacI
TC ChuDM_2017_SRR8942395_bin.4_k119_19830 ChuDM_2017_SRR8942395_bin.4_k119_19830_25 26999 28774 + 4.A.3.1.1
CAZyme ChuDM_2017_SRR8942395_bin.4_k119_19830 ChuDM_2017_SRR8942395_bin.4_k119_19830_26 28841 30280 + GH1
TF ChuDM_2017_SRR8942395_bin.4_k119_19830 ChuDM_2017_SRR8942395_bin.4_k119_19830_27 30542 31579 - LacI
CAZyme ChuDM_2017_SRR8942395_bin.4_k119_19830 ChuDM_2017_SRR8942395_bin.4_k119_19830_28 31921 33363 + GH1
TC ChuDM_2017_SRR8942395_bin.4_k119_19830 ChuDM_2017_SRR8942395_bin.4_k119_19830_29 33536 35296 + 4.A.3.1.1
TF ChuDM_2017_SRR8942395_bin.4_k119_19830 ChuDM_2017_SRR8942395_bin.4_k119_19830_30 35709 36719 - LacI
TC ChuDM_2017_SRR8942395_bin.4_k119_19830 ChuDM_2017_SRR8942395_bin.4_k119_19830_31 36995 38773 + 4.A.3.1.1
CAZyme ChuDM_2017_SRR8942395_bin.4_k119_19830 ChuDM_2017_SRR8942395_bin.4_k119_19830_32 38850 40271 + GH1
Gene ID: ChuDM_2017_SRR8942395_bin.4_k119_19830_23
Type: TC
Location: 25084 - 25422 (-)
Gene ID: ChuDM_2017_SRR8942395_bin.4_k119_19830_24
Type: TF
Location: 25637 - 26641 (-)
Gene ID: ChuDM_2017_SRR8942395_bin.4_k119_19830_25
Type: TC
Location: 26999 - 28774 (+)
Gene ID: ChuDM_2017_SRR8942395_bin.4_k119_19830_26
Type: CAZyme
Location: 28841 - 30280 (+)
Gene ID: ChuDM_2017_SRR8942395_bin.4_k119_19830_27
Type: TF
Location: 30542 - 31579 (-)
Gene ID: ChuDM_2017_SRR8942395_bin.4_k119_19830_28
Type: CAZyme
Location: 31921 - 33363 (+)
Gene ID: ChuDM_2017_SRR8942395_bin.4_k119_19830_29
Type: TC
Location: 33536 - 35296 (+)
Gene ID: ChuDM_2017_SRR8942395_bin.4_k119_19830_30
Type: TF
Location: 35709 - 36719 (-)
Gene ID: ChuDM_2017_SRR8942395_bin.4_k119_19830_31
Type: TC
Location: 36995 - 38773 (+)
Gene ID: ChuDM_2017_SRR8942395_bin.4_k119_19830_32
Type: CAZyme
Location: 38850 - 40271 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
ChuDM_2017_SRR8942395_bin.4_k119_19830_27 vegetarian > omnivore 1.00762 0.03181

🧭 Explore Read Mapping of CGC

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