Cluster: ChuDM_2017_SRR8942395_bin.4_CGC10
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ChuDM_2017_SRR8942395_bin.4
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ChuDM_2017_SRR8942395_bin.4_k119_16309 | ChuDM_2017_SRR8942395_bin.4_k119_16309_11 | 10433 | 12109 | + | 3.A.1.5.35 |
| TC | ChuDM_2017_SRR8942395_bin.4_k119_16309 | ChuDM_2017_SRR8942395_bin.4_k119_16309_12 | 12265 | 13302 | + | 3.A.1.5.37 |
| TC | ChuDM_2017_SRR8942395_bin.4_k119_16309 | ChuDM_2017_SRR8942395_bin.4_k119_16309_13 | 13317 | 14252 | + | 3.A.1.5.11 |
| TC | ChuDM_2017_SRR8942395_bin.4_k119_16309 | ChuDM_2017_SRR8942395_bin.4_k119_16309_14 | 14255 | 15346 | + | 3.A.1.5.34 |
| TC | ChuDM_2017_SRR8942395_bin.4_k119_16309 | ChuDM_2017_SRR8942395_bin.4_k119_16309_15 | 15347 | 16375 | + | 3.A.1.5.36 |
| STP | ChuDM_2017_SRR8942395_bin.4_k119_16309 | ChuDM_2017_SRR8942395_bin.4_k119_16309_16 | 17122 | 19467 | + | GAF | SpoIIE |
| STP | ChuDM_2017_SRR8942395_bin.4_k119_16309 | ChuDM_2017_SRR8942395_bin.4_k119_16309_17 | 19549 | 20295 | + | STAS |
| CAZyme | ChuDM_2017_SRR8942395_bin.4_k119_16309 | ChuDM_2017_SRR8942395_bin.4_k119_16309_18 | 21068 | 22801 | + | GH13_30 |
Gene ID: ChuDM_2017_SRR8942395_bin.4_k119_16309_11
Type: TC
Location: 10433 - 12109 (+)
Type: TC
Location: 10433 - 12109 (+)
Gene ID: ChuDM_2017_SRR8942395_bin.4_k119_16309_12
Type: TC
Location: 12265 - 13302 (+)
Type: TC
Location: 12265 - 13302 (+)
Gene ID: ChuDM_2017_SRR8942395_bin.4_k119_16309_13
Type: TC
Location: 13317 - 14252 (+)
Type: TC
Location: 13317 - 14252 (+)
Gene ID: ChuDM_2017_SRR8942395_bin.4_k119_16309_14
Type: TC
Location: 14255 - 15346 (+)
Type: TC
Location: 14255 - 15346 (+)
Gene ID: ChuDM_2017_SRR8942395_bin.4_k119_16309_15
Type: TC
Location: 15347 - 16375 (+)
Type: TC
Location: 15347 - 16375 (+)
Gene ID: ChuDM_2017_SRR8942395_bin.4_k119_16309_16
Type: STP
Location: 17122 - 19467 (+)
Type: STP
Location: 17122 - 19467 (+)
Gene ID: ChuDM_2017_SRR8942395_bin.4_k119_16309_17
Type: STP
Location: 19549 - 20295 (+)
Type: STP
Location: 19549 - 20295 (+)
Gene ID: ChuDM_2017_SRR8942395_bin.4_k119_16309_18
Type: CAZyme
Location: 21068 - 22801 (+)
Type: CAZyme
Location: 21068 - 22801 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.