Cluster: ChuDM_2017_SRR8942393_bin.2_CGC6
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate:
- Genome ID: ChuDM_2017_SRR8942393_bin.2
- CGC Family ID: CGCFAM_00171
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ChuDM_2017_SRR8942393_bin.2_k119_6667 | ChuDM_2017_SRR8942393_bin.2_k119_6667_7 | 8296 | 9465 | - | GT4 |
| pfam | ChuDM_2017_SRR8942393_bin.2_k119_6667 | ChuDM_2017_SRR8942393_bin.2_k119_6667_8 | 9462 | 10082 | - | Hexapep |
| pfam | ChuDM_2017_SRR8942393_bin.2_k119_6667 | ChuDM_2017_SRR8942393_bin.2_k119_6667_9 | 10089 | 11306 | - | Epimerase | Polysacc_synt_C |
| TC | ChuDM_2017_SRR8942393_bin.2_k119_6667 | ChuDM_2017_SRR8942393_bin.2_k119_6667_10 | 11308 | 12366 | - | 9.B.18.2.1 |
| CAZyme | ChuDM_2017_SRR8942393_bin.2_k119_6667 | ChuDM_2017_SRR8942393_bin.2_k119_6667_11 | 12359 | 13561 | - | GT4 |
| pfam | ChuDM_2017_SRR8942393_bin.2_k119_6667 | ChuDM_2017_SRR8942393_bin.2_k119_6667_12 | 13566 | 14540 | - | ATP-grasp_3 | ATPgrasp_Ter | PylC-like_N |
| TC | ChuDM_2017_SRR8942393_bin.2_k119_6667 | ChuDM_2017_SRR8942393_bin.2_k119_6667_13 | 14533 | 15198 | - | 9.B.18.1.2 |
| STP | ChuDM_2017_SRR8942393_bin.2_k119_6667 | ChuDM_2017_SRR8942393_bin.2_k119_6667_14 | 15191 | 16444 | - | Aminotran_1_2 |
| TC | ChuDM_2017_SRR8942393_bin.2_k119_6667 | ChuDM_2017_SRR8942393_bin.2_k119_6667_15 | 16460 | 18340 | - | 9.B.18.2.1 |
Gene ID: ChuDM_2017_SRR8942393_bin.2_k119_6667_7
Type: CAZyme
Location: 8296 - 9465 (-)
Type: CAZyme
Location: 8296 - 9465 (-)
Gene ID: ChuDM_2017_SRR8942393_bin.2_k119_6667_8
Type: pfam
Location: 9462 - 10082 (-)
Type: pfam
Location: 9462 - 10082 (-)
Gene ID: ChuDM_2017_SRR8942393_bin.2_k119_6667_9
Type: pfam
Location: 10089 - 11306 (-)
Type: pfam
Location: 10089 - 11306 (-)
Gene ID: ChuDM_2017_SRR8942393_bin.2_k119_6667_10
Type: TC
Location: 11308 - 12366 (-)
Type: TC
Location: 11308 - 12366 (-)
Gene ID: ChuDM_2017_SRR8942393_bin.2_k119_6667_11
Type: CAZyme
Location: 12359 - 13561 (-)
Type: CAZyme
Location: 12359 - 13561 (-)
Gene ID: ChuDM_2017_SRR8942393_bin.2_k119_6667_12
Type: pfam
Location: 13566 - 14540 (-)
Type: pfam
Location: 13566 - 14540 (-)
Gene ID: ChuDM_2017_SRR8942393_bin.2_k119_6667_13
Type: TC
Location: 14533 - 15198 (-)
Type: TC
Location: 14533 - 15198 (-)
Gene ID: ChuDM_2017_SRR8942393_bin.2_k119_6667_14
Type: STP
Location: 15191 - 16444 (-)
Type: STP
Location: 15191 - 16444 (-)
Gene ID: ChuDM_2017_SRR8942393_bin.2_k119_6667_15
Type: TC
Location: 16460 - 18340 (-)
Type: TC
Location: 16460 - 18340 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ChuDM_2017_SRR8942393_bin.2_k119_6667_9 | vegetarian > omnivore | 1.49172 | 0.03451 |
| ChuDM_2017_SRR8942393_bin.2_k119_6667_9 | vegetarian > vegan | 1.97520 | 0.03391 |