Cluster: ChuDM_2017_SRR8942393_bin.2_CGC20
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: ChuDM_2017_SRR8942393_bin.2
- CGC Family ID: CGCFAM_00008
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ChuDM_2017_SRR8942393_bin.2_k119_14980 | ChuDM_2017_SRR8942393_bin.2_k119_14980_118 | 123528 | 124295 | - | 3.A.1.103.1 |
| TC | ChuDM_2017_SRR8942393_bin.2_k119_14980 | ChuDM_2017_SRR8942393_bin.2_k119_14980_119 | 124308 | 125153 | - | 3.A.1.103.6 |
| CAZyme | ChuDM_2017_SRR8942393_bin.2_k119_14980 | ChuDM_2017_SRR8942393_bin.2_k119_14980_120 | 125483 | 126244 | + | GT2 |
| CAZyme | ChuDM_2017_SRR8942393_bin.2_k119_14980 | ChuDM_2017_SRR8942393_bin.2_k119_14980_121 | 126276 | 128117 | - | GT2 |
| pfam | ChuDM_2017_SRR8942393_bin.2_k119_14980 | ChuDM_2017_SRR8942393_bin.2_k119_14980_122 | 128150 | 129337 | - | LicD |
| CAZyme | ChuDM_2017_SRR8942393_bin.2_k119_14980 | ChuDM_2017_SRR8942393_bin.2_k119_14980_123 | 129437 | 131317 | - | GT2 |
Gene ID: ChuDM_2017_SRR8942393_bin.2_k119_14980_118
Type: TC
Location: 123528 - 124295 (-)
Type: TC
Location: 123528 - 124295 (-)
Gene ID: ChuDM_2017_SRR8942393_bin.2_k119_14980_119
Type: TC
Location: 124308 - 125153 (-)
Type: TC
Location: 124308 - 125153 (-)
Gene ID: ChuDM_2017_SRR8942393_bin.2_k119_14980_120
Type: CAZyme
Location: 125483 - 126244 (+)
Type: CAZyme
Location: 125483 - 126244 (+)
Gene ID: ChuDM_2017_SRR8942393_bin.2_k119_14980_121
Type: CAZyme
Location: 126276 - 128117 (-)
Type: CAZyme
Location: 126276 - 128117 (-)
Gene ID: ChuDM_2017_SRR8942393_bin.2_k119_14980_122
Type: pfam
Location: 128150 - 129337 (-)
Type: pfam
Location: 128150 - 129337 (-)
Gene ID: ChuDM_2017_SRR8942393_bin.2_k119_14980_123
Type: CAZyme
Location: 129437 - 131317 (-)
Type: CAZyme
Location: 129437 - 131317 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ChuDM_2017_SRR8942393_bin.2_k119_14980_119 | vegan > omnivore | 1.76568 | 0.01332 |
| ChuDM_2017_SRR8942393_bin.2_k119_14980_120 | vegan > omnivore | 1.37590 | 0.01332 |
| ChuDM_2017_SRR8942393_bin.2_k119_14980_121 | vegan > omnivore | 17.20714 | 0.01332 |
| ChuDM_2017_SRR8942393_bin.2_k119_14980_121 | vegetarian > omnivore | 12.48134 | 0.04272 |
| ChuDM_2017_SRR8942393_bin.2_k119_14980_122 | vegan > omnivore | 17.42605 | 0.01332 |
| ChuDM_2017_SRR8942393_bin.2_k119_14980_123 | vegan > omnivore | 10.23205 | 0.01332 |